PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462948134 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C2H2 | ||||||||
Protein Properties | Length: 223aa MW: 23834.3 Da PI: 4.5131 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.00058 | 188 | 204 | 1 | 17 |
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 ++Cp C k+F+r n++ 462948134 188 FSCPVCYKTFNRYNNMQ 204 89*********988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.0E-4 | 188 | 203 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MGDPYTNFLR GYYSHFIPPS NPPPVSSSSS FSSYATSYLH PPPPSPPIRE ALPLLSSLTP 60 PSTTSPPRQH RDEDVQDQKD NCKLTITSCS NSEEAADQAG EVTVALHIGL PSPGPSESAA 120 AAAAVGSGGN QQEAAEEGRS QQEEGGGDEE EGEDAMAVGC ASIGIGRLTK GQYWIPTPSQ 180 ILIGPTQFSC PVCYKTFNRY NNMQVNFAHR IIDPLFFFPR ACA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462948134 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243261 | 1e-57 | AC243261.1 Panicum virgatum clone PV_ABa107-B06, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002437277.1 | 2e-71 | zinc finger protein WIP2 | ||||
TrEMBL | C5Z5T1 | 4e-70 | C5Z5T1_SORBI; Uncharacterized protein | ||||
STRING | Sb10g024040.1 | 6e-71 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15363 | 5 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 4e-21 | C2H2 family protein |