PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462919713

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

WRKY

Protein Properties

Length: 200aa MW: 22173.4 Da PI: 9.6484

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462919713	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.7	2.5e-33	109	167	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg+H+h+ 462919713 109 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLSKDQGVVVTTYEGTHTHP 167 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.6E-34	94	167	IPR003657	WRKY domain
SuperFamily	SSF118290	4.84E-30	101	168	IPR003657	WRKY domain
PROSITE profile	PS50811	30.182	104	169	IPR003657	WRKY domain
SMART	SM00774	1.4E-39	109	168	IPR003657	WRKY domain
Pfam	PF03106	2.6E-27	110	167	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000122	Biological Process	negative regulation of transcription from RNA polymerase II promoter
GO:0010055	Biological Process	atrichoblast differentiation
GO:0032107	Biological Process	regulation of response to nutrient levels
GO:0043620	Biological Process	regulation of DNA-templated transcription in response to stress
GO:0048527	Biological Process	lateral root development
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MEGNYSMLFA TQPSSSTANS YHFMAGTSSH DHDHHVTHVG HRSISHGSFL GDHPSSKDGV 60 SQTELGESSG GGGAGEADRS TGVVEKRKGG KKERRPRYAF QTRSQVDILD DGYRWRKYGQ 120 KAVKNNKFPR SYYRCTHQGC NVKKQVQRLS KDQGVVVTTY EGTHTHPIEK SNDNFEHILT 180 QMQIYSGIGG SGFSSSPMFQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-27	100	168	8	76	Probable WRKY transcription factor 4
2lex_A	2e-27	100	168	8	76	Probable WRKY transcription factor 4
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00506	DAP	Transfer from AT5G13080	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462919713

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728200	8e-92	KJ728200.1 Zea mays clone pUT6475 WRKY transcription factor (WRKY108) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004979296.1	2e-87	probable WRKY transcription factor 75
Refseq	XP_025826644.1	3e-87	probable WRKY transcription factor 12 isoform X1
Refseq	XP_025826645.1	2e-87	probable WRKY transcription factor 75 isoform X2
TrEMBL	A0A3B6APP7	2e-86	A0A3B6APP7_WHEAT; Uncharacterized protein
STRING	Si026859m	9e-87	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1100	38	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	1e-57	WRKY DNA-binding protein 75