 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
462915724 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
| Family |
M-type_MADS |
| Protein Properties |
Length: 215aa MW: 22813.5 Da PI: 9.0745 |
| Description |
M-type_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 462915724 | genome | Tef | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 59.4 | 4.4e-19 | 15 | 63 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
k+i nk ++vt +kR+ g+lKKA EL LC+a vavi+fs+ gk++ +
462915724 15 KPIANKAAKEVTCCKRKGGLLKKACELALLCGAHVAVIVFSHAGKVFGF 63
689******************************************9877 PP
|
| 2 | SRF-TF | 25.9 | 1.3e-08 | 68 | 93 | 24 | 49 |
HHHHHHHHT-EEEEEEE-TTSEEEEE CS
SRF-TF 24 AeELSvLCdaevaviifsstgklyey 49
A+EL LC+a vavi+fs+ gk++ +
462915724 68 ASELALLCGAHVAVIVFSHAGKVFGF 93
99********************9987 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 22.483 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 3.7E-25 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 3.14E-20 | 8 | 66 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.1E-17 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.7E-19 | 17 | 63 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.1E-17 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.1E-17 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 0.085 | 68 | 96 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 2.4E-8 | 68 | 93 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 5.36E-9 | 68 | 105 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 10.862 | 68 | 97 | IPR002100 | Transcription factor, MADS-box |
| Sequence ? help Back to Top |
| Protein Sequence Length: 215 aa
Download sequence Send
to blast |
MGRTPSKGRQ RIEIKPIANK AAKEVTCCKR KGGLLKKACE LALLCGAHVA VIVFSHAGKV 60
FGFGRPPASE LALLCGAHVA VIVFSHAGKV FGFGSPSVDA VLRGVAPLPP GEEAAPLPDD 120
VGGDADLAAV EATLRQAEDT KALVEAEKAR LAAVGEKVLR AVPPGKKFWW EADVEQLGEA 180
ELPEFAKALH RFRENVQRHA NKLRSDAPPT PLLLQ
|
