PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462915724
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family M-type_MADS
Protein Properties Length: 215aa    MW: 22813.5 Da    PI: 9.0745
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462915724genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.44.4e-191563149
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
               k+i nk  ++vt +kR+ g+lKKA EL  LC+a vavi+fs+ gk++ +
  462915724 15 KPIANKAAKEVTCCKRKGGLLKKACELALLCGAHVAVIVFSHAGKVFGF 63
               689******************************************9877 PP
2SRF-TF25.91.3e-0868932449
               HHHHHHHHT-EEEEEEE-TTSEEEEE CS
     SRF-TF 24 AeELSvLCdaevaviifsstgklyey 49
               A+EL  LC+a vavi+fs+ gk++ +
  462915724 68 ASELALLCGAHVAVIVFSHAGKVFGF 93
               99********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.483767IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-25766IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-20866IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-17929IPR002100Transcription factor, MADS-box
PfamPF003191.7E-191763IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-172944IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-174465IPR002100Transcription factor, MADS-box
SMARTSM004320.0856896IPR002100Transcription factor, MADS-box
PfamPF003192.4E-86893IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-968105IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.8626897IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MGRTPSKGRQ RIEIKPIANK AAKEVTCCKR KGGLLKKACE LALLCGAHVA VIVFSHAGKV  60
FGFGRPPASE LALLCGAHVA VIVFSHAGKV FGFGSPSVDA VLRGVAPLPP GEEAAPLPDD  120
VGGDADLAAV EATLRQAEDT KALVEAEKAR LAAVGEKVLR AVPPGKKFWW EADVEQLGEA  180
ELPEFAKALH RFRENVQRHA NKLRSDAPPT PLLLQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap462915724
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813513.11e-58agamous-like MADS-box protein AGL62
TrEMBLA0A1E5V6081e-58A0A1E5V608_9POAL; Uncharacterized protein
STRINGPavir.J38547.1.p2e-54(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-12AGAMOUS-like 61