PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462914279
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 196aa    MW: 22362.7 Da    PI: 8.6174
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462914279genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000645470117
               EEETTTTEEESSHHHHH CS
    zf-C2H2  1 ykCpdCgksFsrksnLk 17
               ++Cp C k+F+r  n++
  462914279 54 FSCPVCFKTFNRYNNMQ 70
               89********9988765 PP
2zf-C2H212.30.0005163183323
                ETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                C  Cgk F  k + ++H +++
  462914279 163 CRRCGKAFAVKGDWRTHEKNC 183
                *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.0E-45470IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.04E-6143181No hitNo description
Gene3DG3DSA:3.30.160.601.3E-5147181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.538161181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MENGAGGEEG EEEEEEEEAA AAPLGFTSTP IGRLNKGQYW IPTPSQILIG PTQFSCPVCF  60
KTFNRYNNMQ AIAVEIVVRI SLIAFDDYPN IRTMHMWGHG SQYRKGPESL RGIQPTAMLR  120
LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGLKP FLCRRCGKAF AVKGDWRTHE  180
KNCGRLCNCF TYFWLV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462914279
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9696611e-129EU969661.1 Zea mays clone 333696 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957169.11e-100zinc finger protein WIP2
SwissprotQ9SVY14e-90ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A3B6KKB21e-100A0A3B6KKB2_WHEAT; Uncharacterized protein
TrEMBLA0A446T6G61e-100A0A446T6G6_TRITD; Uncharacterized protein
STRINGSi029897m2e-99(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.12e-90C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]