PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462902578
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 407aa    MW: 45134.8 Da    PI: 10.378
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462902578genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.31.3e-1331116198
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                ffkvl   +   ++rl +p +f++++        + + + +s r+ ++ + +r++ +++++t+GW +Fv+++ L+e +f+vF++dg+++f  + +vf+
  462902578  31 FFKVL---MGDFKKRLKIPPNFCKHIPW------EASRQAKSLREASMAV-IRRSAEGTFFTSGWPKFVQDQALRELEFLVFRYDGNTRF--TATVFD 116
                66777...4455668********76632......2444556667777777.4899999***************************99999..667666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-1526120IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-1626120IPR015300DNA-binding pseudobarrel domain
CDDcd100172.93E-1329116No hitNo description
PfamPF023622.3E-1131114IPR003340B3 DNA binding domain
SMARTSM010192.4E-531118IPR003340B3 DNA binding domain
PROSITE profilePS508639.13655118IPR003340B3 DNA binding domain
CDDcd100175.01E-9358392No hitNo description
SuperFamilySSF1019362.94E-9358392IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-8358392IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.882359394IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MWSSTVQVRE ARMAAPERQS PWASGERRPH FFKVLMGDFK KRLKIPPNFC KHIPWEASRQ  60
AKSLREASMA VIRRSAEGTF FTSGWPKFVQ DQALRELEFL VFRYDGNTRF TATVFDTSGC  120
EREDLLLGGG GAEPRPRGKK RGRPRATKNK DAVGKEMVPY RAPSDRQLEA ASTPELGKLY  180
VRLSAIEPGL YKRPDPRWRR MPTLPVLTPT VSIALAAAGA GAVKAEVEDG DELALCVVIP  240
APPPARGPAR ADVGAAEKKS SRAAATKTRS IQDDLQAATE EDIPASVRRY KGYVSRRRPA  300
TGAERQAYCV MRMSTMHVYY SFMMVSVHFQ QLDQVPDWVL AAAPAPGADG RGAPGSRRRG  360
WCAFARGNCL EEGDYCVFEL VAAAEFRVHI FRVVDPPVPA VRLRTTT
Cis-element ? help Back to Top
SourceLink
PlantRegMap462902578
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032291e-42AP003229.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0022F10.
GenBankAP0149571e-42AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-42CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969798.11e-133B3 domain-containing protein Os01g0723500 isoform X1
SwissprotQ8S2E61e-124Y1235_ORYSJ; B3 domain-containing protein Os01g0723500
TrEMBLC5XIE61e-138C5XIE6_SORBI; Uncharacterized protein
STRINGSb03g033260.11e-138(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127923135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-12B3 family protein