PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462895094 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 511aa MW: 54850 Da PI: 9.526 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.7 | 6.7e-19 | 422 | 472 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeI+dp+ + r++lg+++t+ eAa+a+++a+ +++ 462895094 422 KYRGVRQRP-WGKYAAEICDPK----CrgSRVWLGTYDTPVEAARAYDRAAFRMRS 472 8********.**********83....335************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03398 | 5.4E-9 | 20 | 76 | IPR005061 | Vacuolar protein sorting-associated protein Ist1 |
Gene3D | G3DSA:3.30.730.10 | 5.8E-30 | 422 | 481 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.326 | 422 | 480 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.30E-24 | 422 | 481 | No hit | No description |
Pfam | PF00847 | 6.9E-14 | 422 | 472 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-34 | 422 | 486 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-21 | 422 | 481 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.0E-9 | 423 | 434 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-9 | 446 | 462 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0015031 | Biological Process | protein transport | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MGRRLDVLLG RTTKQTARLK TLLGLATTRL GVLRGHRQVR CAQARGDAEQ LLRLGHRDRA 60 LLRAEQVVRE QNALDAPSRN RGCGVNAKIV QNLSTRQPSL ESRQMVLQEI AAEKGIAASY 120 DDAGRSNQRN RQQNRAPREQ VEIEEDISGD SAQRYKDVEA AAQAAFESAA SAAAAAKAAM 180 ELSRGKPTSG ASDRIGHARN FSSEIEDFPE DQANHEQQEP HPTDVCRAKA VRTGFLHAFQ 240 QERLPDGGAA PFSWESHAKE AEASASTIRS EAAGLRYDTW GPAAAWAGTG MAERESRKRG 300 RGAAVVGAEA DDGAHHLLLI DDGASAERAR GVRPEPHVDA LDVEAEAAAG QHARGLPGAS 360 SVMQTAQSAA GSPGATSFRG SARMAGSSMP SEPSSPATHP LPVSVPPSSY AWAAVPVEDF 420 HKYRGVRQRP WGKYAAEICD PKCRGSRVWL GTYDTPVEAA RAYDRAAFRM RSAKAILNFP 480 NEVGTRGADL WSPPPPPATQ GAVANKPKRQ Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-23 | 423 | 485 | 6 | 68 | ATERF1 |
3gcc_A | 6e-23 | 423 | 485 | 6 | 68 | ATERF1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462895094 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109141 | 7e-76 | AK109141.1 Oryza sativa Japonica Group cDNA clone:002-155-E09, full insert sequence. | |||
GenBank | AL607006 | 7e-76 | AL607006.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079A21, complete sequence. | |||
GenBank | AL731613 | 7e-76 | AL731613.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence. | |||
GenBank | AP014960 | 7e-76 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY339379 | 7e-76 | AY339379.1 Oryza sativa (japonica cultivar-group) Ap26 mRNA, complete cds. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 1e-28 | ethylene responsive element binding factor 5 |