PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462895094
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 511aa    MW: 54850 Da    PI: 9.526
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462895094genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.7e-19422472255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+++AeI+dp+    +   r++lg+++t+ eAa+a+++a+ +++ 
  462895094 422 KYRGVRQRP-WGKYAAEICDPK----CrgSRVWLGTYDTPVEAARAYDRAAFRMRS 472
                8********.**********83....335************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF033985.4E-92076IPR005061Vacuolar protein sorting-associated protein Ist1
Gene3DG3DSA:3.30.730.105.8E-30422481IPR001471AP2/ERF domain
PROSITE profilePS5103222.326422480IPR001471AP2/ERF domain
CDDcd000182.30E-24422481No hitNo description
PfamPF008476.9E-14422472IPR001471AP2/ERF domain
SMARTSM003802.8E-34422486IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-21422481IPR016177DNA-binding domain
PRINTSPR003671.0E-9423434IPR001471AP2/ERF domain
PRINTSPR003671.0E-9446462IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0015031Biological Processprotein transport
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MGRRLDVLLG RTTKQTARLK TLLGLATTRL GVLRGHRQVR CAQARGDAEQ LLRLGHRDRA  60
LLRAEQVVRE QNALDAPSRN RGCGVNAKIV QNLSTRQPSL ESRQMVLQEI AAEKGIAASY  120
DDAGRSNQRN RQQNRAPREQ VEIEEDISGD SAQRYKDVEA AAQAAFESAA SAAAAAKAAM  180
ELSRGKPTSG ASDRIGHARN FSSEIEDFPE DQANHEQQEP HPTDVCRAKA VRTGFLHAFQ  240
QERLPDGGAA PFSWESHAKE AEASASTIRS EAAGLRYDTW GPAAAWAGTG MAERESRKRG  300
RGAAVVGAEA DDGAHHLLLI DDGASAERAR GVRPEPHVDA LDVEAEAAAG QHARGLPGAS  360
SVMQTAQSAA GSPGATSFRG SARMAGSSMP SEPSSPATHP LPVSVPPSSY AWAAVPVEDF  420
HKYRGVRQRP WGKYAAEICD PKCRGSRVWL GTYDTPVEAA RAYDRAAFRM RSAKAILNFP  480
NEVGTRGADL WSPPPPPATQ GAVANKPKRQ Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-23423485668ATERF1
3gcc_A6e-23423485668ATERF1
Cis-element ? help Back to Top
SourceLink
PlantRegMap462895094
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1091417e-76AK109141.1 Oryza sativa Japonica Group cDNA clone:002-155-E09, full insert sequence.
GenBankAL6070067e-76AL607006.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079A21, complete sequence.
GenBankAL7316137e-76AL731613.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence.
GenBankAP0149607e-76AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAY3393797e-76AY339379.1 Oryza sativa (japonica cultivar-group) Ap26 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-28ethylene responsive element binding factor 5