PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462889417 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 252aa MW: 26577.1 Da PI: 9.0938 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.9 | 7e-11 | 37 | 80 | 4 | 47 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r++r+ +NRe+ArrsR RK+ ++ L +++L eN + 462889417 37 QRRAKRMLSNRESARRSRMRKQRHLDDLSAQAAQLRRENAHVAT 80 689************************************87665 PP | |||||||
2 | bZIP_1 | 31.3 | 4.4e-10 | 127 | 167 | 7 | 47 |
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 + r+ +NRe+ArrsR RK+ ++ L +++L eN + 462889417 127 AARMLSNRESARRSRMRKQRHLDDLSAQAAQLRRENAHVAT 167 68**********************************87665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.9E-14 | 34 | 98 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.76 | 36 | 78 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.7E-9 | 37 | 79 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.25E-10 | 38 | 86 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.1E-8 | 38 | 110 | No hit | No description |
CDD | cd14702 | 1.06E-14 | 39 | 87 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 41 | 56 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 5.3E-10 | 121 | 185 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 6.8E-8 | 128 | 197 | No hit | No description |
SuperFamily | SSF57959 | 1.19E-9 | 128 | 173 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 129 | 143 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 1.55E-13 | 129 | 174 | No hit | No description |
PROSITE profile | PS50217 | 8.531 | 129 | 165 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.6E-8 | 129 | 166 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0080149 | Biological Process | sucrose induced translational repression | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 252 aa Download sequence Send to blast |
MASSSGSGTS SGSLSAATAA LAAAAGTEEE LRALMEQRRA KRMLSNRESA RRSRMRKQRH 60 LDDLSAQAAQ LRRENAHVAT ALGLTTQGLL AVDAENAVLR TQAAELAARL QSLNDIIACM 120 NTNAAAAARM LSNRESARRS RMRKQRHLDD LSAQAAQLRR ENAHVATALG LTTQGLLAVD 180 AENAVLRTQA AELAARLHSL NDIIACMNTN AAAAGAVAAV SLASAADPFL AFDGATAFDD 240 LLRSCPEMFP LC |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 137 | 144 | RRSRMRKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds to the DNA sequence 5'-ACTCAT-3' in target gene promoters. Promotes POX1/PRODH1 expression in response to hypoosmolarity stress (PubMed:15047879). Positively regulates the expression of ASN1 and POX2/PRODH2 genes, which are involved in amino acid metabolism (PubMed:18088315). Regulates several metabolic pathways such as myo-inositol, raffinose and trehalose. Regulates several trehalose metabolism genes, including TRE1, TPP5 and TPP6 (PubMed:21534971). Mediates recruitment of the histone acetylation machinery to activate auxin-induced transcription. Interacts with ADA2B adapter protein to promote ADA2B-mediated recruitment of SAGA-like histone acetyltransferase complexes to specific auxin-responsive genes (PubMed:24861440). {ECO:0000269|PubMed:15047879, ECO:0000269|PubMed:18088315, ECO:0000269|PubMed:21534971, ECO:0000269|PubMed:24861440}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00470 | DAP | Transfer from AT4G34590 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462889417 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By light (PubMed:9620274). Induced by hypoosmolarity (PubMed:15047879). Repressed by sucrose (at protein level) (PubMed:9721683, PubMed:15208401). {ECO:0000269|PubMed:15047879, ECO:0000269|PubMed:15208401, ECO:0000269|PubMed:9620274, ECO:0000269|PubMed:9721683}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT067356 | 1e-143 | BT067356.2 Zea mays full-length cDNA clone ZM_BFc0022C11 mRNA, complete cds. | |||
GenBank | BT085301 | 1e-143 | BT085301.2 Zea mays full-length cDNA clone ZM_BFb0368K21 mRNA, complete cds. | |||
GenBank | BT085353 | 1e-143 | BT085353.2 Zea mays full-length cDNA clone ZM_BFc0002B07 mRNA, complete cds. | |||
GenBank | HQ858796 | 1e-143 | HQ858796.1 Zea mays clone UT1860 bZIP transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797450.1 | 3e-63 | bZIP transcription factor 11-like | ||||
Swissprot | O65683 | 3e-31 | BZP11_ARATH; bZIP transcription factor 11 | ||||
TrEMBL | A0A0A8XQ90 | 2e-63 | A0A0A8XQ90_ARUDO; Uncharacterized protein | ||||
STRING | Sb04g002700.1 | 7e-59 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4459 | 33 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G34590.1 | 3e-26 | G-box binding factor 6 |