 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
462889032 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 233aa MW: 26617.3 Da PI: 6.9887 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 462889032 | genome | Tef | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 73.6 | 1.7e-23 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krien ++rq tf kRr g++KKA ELSvLCd++ ++++fs +gkly y
462889032 9 KRIENPTQRQSTFYKRRDGLFKKARELSVLCDVDLLLLLFSASGKLYHYL 58
79*********************************************996 PP
|
| 2 | K-box | 22.8 | 3.9e-09 | 123 | 206 | 15 | 98 |
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98
++ + ela++ e L++e+R + +d e+ ++ L+ Le++Le ++ k+R K++ + +i++l + + qee L +l
462889032 123 QERRAELAQVAHMCELLETELRFMTVDDGEQYTVPSLEMLEHNLEAAMHKVRCEKDRKIGGEINYLENVIRGRQEERYGLCDQL 206
6678999***********************************************************999999999888776665 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 28.202 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 2.1E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 1.11E-27 | 2 | 85 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 9.8E-23 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.1E-22 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 9.8E-23 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 9.8E-23 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 9.445 | 122 | 212 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 7.6E-12 | 122 | 206 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 233 aa
Download sequence Send
to blast |
MGRGRGEIKR IENPTQRQST FYKRRDGLFK KARELSVLCD VDLLLLLFSA SGKLYHYLSP 60
TVPSVKELVE RYEAATHTKV WTDIQQVKFV NIYSGDCYTH VHLTISISVS RVLAPHGDCC 120
SRQERRAELA QVAHMCELLE TELRFMTVDD GEQYTVPSLE MLEHNLEAAM HKVRCEKDRK 180
IGGEINYLEN VIRGRQEERY GLCDQLAHSQ TLKDVEAGSN ANNNGLDLKL GFN
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT037640 | 2e-93 | BT037640.1 Zea mays full-length cDNA clone ZM_BFb0185F01 mRNA, complete cds. |
| GenBank | BT068004 | 2e-93 | BT068004.1 Zea mays full-length cDNA clone ZM_BFb0028K02 mRNA, complete cds. |
| GenBank | EU975046 | 2e-93 | EU975046.1 Zea mays clone 465896 MADS-box transcription factor 32 mRNA, complete cds. |
| GenBank | KJ726919 | 2e-93 | KJ726919.1 Zea mays clone pUT3464 MADS transcription factor (MADS43) mRNA, partial cds. |
