PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462884212 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 467aa MW: 53008.3 Da PI: 9.0125 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.7e-19 | 184 | 233 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg++ t+e+Aaka++a ++k++g 462884212 184 PYRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTYETPEDAAKAYDAEARKIRG 233 59*******.**********954...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.894 | 184 | 241 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-21 | 184 | 243 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.5E-37 | 184 | 247 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 185 | 196 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-11 | 185 | 233 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-31 | 185 | 243 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.31E-30 | 185 | 242 | No hit | No description |
PRINTS | PR00367 | 2.7E-10 | 207 | 223 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MVSPASRIPC KSIVDMKRIK NHGEWGRRRL AKPYKERDDF EAEFQAFLKA CDEMDESHDE 60 FMALSPWEDD LKGVLEASKE KYTFTSAKNE NRGEWGQRRL MKPYNDGDNF EAKFQAFLMY 120 DKMDENHDEF MALQRWEDDL RGVLEGSKEK DTFTSATNDA INNHKATNGD EVTIVMPKRK 180 RMNPYRGIRR RPWGKWAAEI RDPRKGVRVW LGTYETPEDA AKAYDAEARK IRGKKAKVNF 240 PDETPPSSLL NNTPKQIAMA RPMMLLPTEE LNINQSLGFY GSNEDLFSVV NFNGNKSTFM 300 PSGSFNSLSM KKPHEISRMG VFPTQSGFPS RSLLPCAEML ISGRTVDGLS TMIERNEGAT 360 TAPALSNAMS NLPPVVHGVE AGARIDHPIL KEIATEYIPP ILQVKIHFMP RLIFEKGKPA 420 IHDEAAGIGR PARPRRWSSL IVTGQTPEQA HHMRKQRQES GQDGCKM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-19 | 185 | 241 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 4e-19 | 185 | 241 | 6 | 63 | ATERF1 |
3gcc_A | 4e-19 | 185 | 241 | 6 | 63 | ATERF1 |
5wx9_A | 8e-19 | 185 | 243 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462884212 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A317Y674 | 3e-74 | A0A317Y674_MAIZE; Ethylene-responsive transcription factor ERF071 | ||||
STRING | Pavir.Fa00811.1.p | 2e-75 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16850 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 8e-31 | ethylene-responsive element binding protein |