PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462883501
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARR-B
Protein Properties Length: 523aa    MW: 58712.3 Da    PI: 6.1075
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462883501genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.23.3e-27185238155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                ++r++W+ +LH+ Fve+v++L G+ekA+Pk+i+e+m+v+gLt+ehv+SHLQkYRl
  462883501 185 RQRIQWSGQLHRLFVEVVHRL-GIEKAVPKKIVEMMNVEGLTREHVASHLQKYRL 238
                58*******************.********************************8 PP
2Response_reg83.37.4e-28121221109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH....ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd....pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                   vl vdD+++ + l+++ l++ +y +v++++++e ale+l++++    +Dl+++D+ mpgmdG++ll+ i  e  ++p+i+++a+++ e++ + +k G
     462883501  12 VLAVDDDHVSLTLIEKQLRRCRY-NVTTVTHAETALEMLRARRdadqFDLVITDVHMPGMDGFKLLELIGLEM-DIPVIMLSANDTLETMMKGIKHG 106
                   799********************.***************88888889**********************6644.8********************** PP

                   ESEEEESS--HHHHHH CS
  Response_reg  94 akdflsKpfdpeelvk 109
                   a+ +l+Kp+  e+l +
     462883501 107 ARNYLVKPVGLEQLKN 122
                   *************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.9E-1162517IPR017053Response regulator B-type, plant
SuperFamilySSF521723.56E-349130IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.3E-399158No hitNo description
SMARTSM004484.6E-3010124IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.69811128IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.4E-2412122IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.31E-2813121No hitNo description
PROSITE profilePS512949.163182241IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.8E-27183243IPR009057Homeodomain-like
SuperFamilySSF466892.87E-18184242IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-23186238IPR006447Myb domain, plants
PfamPF002492.7E-6189237IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MDVDGFRAKL HVLAVDDDHV SLTLIEKQLR RCRYNVTTVT HAETALEMLR ARRDADQFDL  60
VITDVHMPGM DGFKLLELIG LEMDIPVIML SANDTLETMM KGIKHGARNY LVKPVGLEQL  120
KNLWIHVVRK NTDDPSNSIN NYSDDDHHQS QSWDSEDENV ANHTSRSSRK KKKEDGTRDN  180
KEAKRQRIQW SGQLHRLFVE VVHRLGIEKA VPKKIVEMMN VEGLTREHVA SHLQKYRLYL  240
KKLSTGTYRS HNSFTDETVW SEGNSINTHA LGTFQDNLEH GRYPPSISFA GSSNSRNPFA  300
RMNSQTHNML PTQSVQVMNQ RNLNTSSNSF ANIRNGSQPL AASMEATYYP YRSYASLCMS  360
DPDPSDGNRR KINRSSRLAA SSVQNYELQN QMAALTRTTS PMVGFIEQVE PFNIGSNTES  420
TVMPNYNSAS GGTSSVIPDL PSIQMYNDVM QSQMLNGGDG SGSLHDHQTA ADQLNCNNES  480
LIGTSSGQNG LSDDLDDIFS DYLNQDVFKN IDAFMDGDCD FSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A9e-21185241157Transcription factor LUX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168173RKKKKE
Cis-element ? help Back to Top
SourceLink
PlantRegMap462883501
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1872246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-73response regulator 2