PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462881195
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family M-type_MADS
Protein Properties Length: 134aa    MW: 15936 Da    PI: 9.7755
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462881195genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.12.8e-244594251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               rie+   rqv fskRr g++KKA+ELS LCda+va++++s+ g+ly ++s
  462881195 45 RIEDRVSRQVRFSKRRSGLFKKAYELSELCDAQVALVVLSPAGRLYQFAS 94
               8***********************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.7E-303695IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.2453696IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-263858IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-2738111IPR002100Transcription factor, MADS-box
CDDcd002656.31E-3339106No hitNo description
PfamPF003191.4E-244592IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-265873IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-267394IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MEKDEVVWKA QQQQQPEEEE EENGWEKTTA ARRKKKKRGR VEMRRIEDRV SRQVRFSKRR  60
SGLFKKAYEL SELCDAQVAL VVLSPAGRLY QFASSNSSIE KIFDRYWDLA NTLNDLNIEA  120
RDSWIDFNIQ VKHK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-163896361Myocyte-specific enhancer factor 2B
1tqe_Q4e-163896361Myocyte-specific enhancer factor 2B
1tqe_R4e-163896361Myocyte-specific enhancer factor 2B
1tqe_S4e-163896361Myocyte-specific enhancer factor 2B
6c9l_A4e-163896361Myocyte-specific enhancer factor 2B
6c9l_B4e-163896361Myocyte-specific enhancer factor 2B
6c9l_C4e-163896361Myocyte-specific enhancer factor 2B
6c9l_D4e-163896361Myocyte-specific enhancer factor 2B
6c9l_E4e-163896361Myocyte-specific enhancer factor 2B
6c9l_F4e-163896361Myocyte-specific enhancer factor 2B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13137RRKKKKR
23237RKKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462881195
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820080.15e-54MADS-box transcription factor 51-like isoform X1
RefseqXP_025820081.15e-54MADS-box transcription factor 51-like isoform X1
RefseqXP_025820082.14e-54MADS-box transcription factor 51-like isoform X2
SwissprotQ9XJ612e-30MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBLA0A2T7D9Y56e-54A0A2T7D9Y5_9POAL; Uncharacterized protein
STRINGSi014540m2e-51(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.12e-26AGAMOUS-like 14
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]