PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462880957 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 167aa MW: 17773.3 Da PI: 10.6209 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.5 | 4.5e-20 | 50 | 99 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+G+r+++ +grW+AeIrdp++ +r++lg++ t+e+Aa+a++ a+++++g+ 462880957 50 YRGIRRRP-WGRWAAEIRDPRK---GARVWLGTYATPEDAARAYDVAAREIRGA 99 9*******.**********954...4*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.1E-34 | 49 | 112 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.79 | 49 | 106 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.3E-14 | 49 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-22 | 49 | 107 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-31 | 49 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 50 | 61 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.49E-29 | 50 | 106 | No hit | No description |
PRINTS | PR00367 | 1.3E-10 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MCGGAIIADF VPAGAGRPAA SYTDTISASN FSGEEEVTPR TPAPGRKTAY RGIRRRPWGR 60 WAAEIRDPRK GARVWLGTYA TPEDAARAYD VAAREIRGAK AKLNFPPAVG AGASSAATGA 120 KKRRRISGGC EALVMLPKFD SVRQKLPGQT GFLGDYSVVC TYILLVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 50 | 112 | 6 | 69 | ATERF1 |
3gcc_A | 2e-21 | 50 | 112 | 6 | 69 | ATERF1 |
5wx9_A | 8e-21 | 50 | 113 | 15 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 121 | 125 | KRRRI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462880957 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT064397 | 2e-83 | BT064397.1 Zea mays full-length cDNA clone ZM_BFc0165J07 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004962330.1 | 3e-61 | ethylene-responsive transcription factor ERF071 | ||||
Swissprot | P42736 | 2e-32 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A0A9TEE1 | 2e-65 | A0A0A9TEE1_ARUDO; Uncharacterized protein | ||||
STRING | Si023329m | 1e-60 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 2e-34 | ethylene-responsive element binding protein |