PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462880506
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 190aa    MW: 20539.6 Da    PI: 6.7932
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462880506genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-1898147356
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                y+GVr+++ +grW++eIrdp+    + +r ++g+f+ta +Aa+a++a +++++g+
  462880506  98 YRGVRQRP-WGRWASEIRDPV----KgARLWIGTFDTAADAARAYDAEARRIHGA 147
                9*******.**********75....44*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-2297155IPR016177DNA-binding domain
SMARTSM003804.3E-3397160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-3197155IPR001471AP2/ERF domain
PROSITE profilePS5103222.65597154IPR001471AP2/ERF domain
PRINTSPR003679.8E-1198109IPR001471AP2/ERF domain
CDDcd000181.37E-1698156No hitNo description
PfamPF008474.0E-1198146IPR001471AP2/ERF domain
PRINTSPR003679.8E-11120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MRSDHAFFHG PVARRRRFSS AGKKKRPGVL LLSADDDSEQ WEAAFREFVA SESDGYGDAI  60
APPAFQIGDT MAPGDGVSSG SAESGPTPAP ARRRRGTYRG VRQRPWGRWA SEIRDPVKGA  120
RLWIGTFDTA ADAARAYDAE ARRIHGARAR TNFPPSDGEA STTPLELECC SDDVLDSLLA  180
GFDDASPRTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2098154663ATERF1
3gcc_A7e-2098154663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462880506
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4539648e-55DQ453964.1 Oryza sativa (indica cultivar-group) clone BAC 101O9 chromosome 9 map Sub1 locus, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610635.14e-34ethylene-responsive transcription factor 1-like
TrEMBLA0A0D9XC343e-38A0A0D9XC34_9ORYZ; Uncharacterized protein
STRINGLPERR09G02840.16e-39(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP152001318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.13e-12ERF family protein