PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462880506 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 190aa MW: 20539.6 Da PI: 6.7932 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.8 | 1.3e-18 | 98 | 147 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +grW++eIrdp+ + +r ++g+f+ta +Aa+a++a +++++g+ 462880506 98 YRGVRQRP-WGRWASEIRDPV----KgARLWIGTFDTAADAARAYDAEARRIHGA 147 9*******.**********75....44*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-22 | 97 | 155 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.3E-33 | 97 | 160 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.7E-31 | 97 | 155 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.655 | 97 | 154 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.8E-11 | 98 | 109 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.37E-16 | 98 | 156 | No hit | No description |
Pfam | PF00847 | 4.0E-11 | 98 | 146 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.8E-11 | 120 | 136 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MRSDHAFFHG PVARRRRFSS AGKKKRPGVL LLSADDDSEQ WEAAFREFVA SESDGYGDAI 60 APPAFQIGDT MAPGDGVSSG SAESGPTPAP ARRRRGTYRG VRQRPWGRWA SEIRDPVKGA 120 RLWIGTFDTA ADAARAYDAE ARRIHGARAR TNFPPSDGEA STTPLELECC SDDVLDSLLA 180 GFDDASPRTA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-20 | 98 | 154 | 6 | 63 | ATERF1 |
3gcc_A | 7e-20 | 98 | 154 | 6 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462880506 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ453964 | 8e-55 | DQ453964.1 Oryza sativa (indica cultivar-group) clone BAC 101O9 chromosome 9 map Sub1 locus, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610635.1 | 4e-34 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A0D9XC34 | 3e-38 | A0A0D9XC34_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR09G02840.1 | 6e-39 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15200 | 13 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 3e-12 | ERF family protein |