PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462878481
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 275aa    MW: 30095.7 Da    PI: 5.7335
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462878481genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-17122170455
        AP2   4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 GVr ++ +g+++AeIrd + ng   r+++g+f+t+eeAa a+++a+ +++g
  462878481 122 IGVRTRP-WGKYAAEIRDSTRNG--ERVWIGTFDTPEEAALAYDQAAYSMRG 170
                6***999.**********44465..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.376120178IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-21121180IPR016177DNA-binding domain
PRINTSPR003672.1E-7121132IPR001471AP2/ERF domain
PfamPF008471.9E-12122170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-27123179IPR001471AP2/ERF domain
CDDcd000181.89E-23123179No hitNo description
SMARTSM003801.6E-29123184IPR001471AP2/ERF domain
PRINTSPR003672.1E-7144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEPHFSSNSY YYGGDAVSHN TYYAQEEQHA AAGCYDDSYY SNNTGDHHLT YGGGNANGYC  60
GEPAWAPSSQ LQLHFGGGDT DQYYYSSTSC QQQQEIGVEH VSALMGAATI SNKPMTSASP  120
LIGVRTRPWG KYAAEIRDST RNGERVWIGT FDTPEEAALA YDQAAYSMRG DGAVLNFPVE  180
RVQESLRALG LRCAAGDSPV LALKQRHCIR KRTPKNKKSS SSQSSEQTTT TSHTHHGKKK  240
QEVASSSSSY VLELEDLGPD YLEELLALSS DQSNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-271231801774Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462878481
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959050.11e-72ethylene-responsive transcription factor 1
TrEMBLK4A2J13e-71K4A2J1_SETIT; Uncharacterized protein
STRINGSi033089m6e-72(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.18e-41ethylene response factor 1