PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462878481 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 275aa MW: 30095.7 Da PI: 5.7335 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.7 | 1.2e-17 | 122 | 170 | 4 | 55 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 GVr ++ +g+++AeIrd + ng r+++g+f+t+eeAa a+++a+ +++g 462878481 122 IGVRTRP-WGKYAAEIRDSTRNG--ERVWIGTFDTPEEAALAYDQAAYSMRG 170 6***999.**********44465..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.376 | 120 | 178 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-21 | 121 | 180 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.1E-7 | 121 | 132 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-12 | 122 | 170 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-27 | 123 | 179 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.89E-23 | 123 | 179 | No hit | No description |
SMART | SM00380 | 1.6E-29 | 123 | 184 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-7 | 144 | 160 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MEPHFSSNSY YYGGDAVSHN TYYAQEEQHA AAGCYDDSYY SNNTGDHHLT YGGGNANGYC 60 GEPAWAPSSQ LQLHFGGGDT DQYYYSSTSC QQQQEIGVEH VSALMGAATI SNKPMTSASP 120 LIGVRTRPWG KYAAEIRDST RNGERVWIGT FDTPEEAALA YDQAAYSMRG DGAVLNFPVE 180 RVQESLRALG LRCAAGDSPV LALKQRHCIR KRTPKNKKSS SSQSSEQTTT TSHTHHGKKK 240 QEVASSSSSY VLELEDLGPD YLEELLALSS DQSNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-27 | 123 | 180 | 17 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00374 | DAP | Transfer from AT3G23240 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462878481 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004959050.1 | 1e-72 | ethylene-responsive transcription factor 1 | ||||
TrEMBL | K4A2J1 | 3e-71 | K4A2J1_SETIT; Uncharacterized protein | ||||
STRING | Si033089m | 6e-72 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 8e-41 | ethylene response factor 1 |