PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462876955

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

MIKC_MADS

Protein Properties

Length: 223aa MW: 25881.6 Da PI: 7.6652

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462876955	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.9	2.8e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtfskRrng+lKKA E+SvLCdaev +ifss gkly+++s 462876955 9 KRIENSTNRQVTFSKRRNGLLKKAREISVLCDAEVGAVIFSSAGKLYDFCS 59 79***********************************************96 PP
2	K-box	70	7.6e-24	85	183	1	99
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 yq++sgk l+++k++s + e++++kke++n+q e+Rhl+GedL+sL+ keL +e++L+++l++ +k e++ + +++ + e+e++ +L+++ + 462876955 85 YQTNSGKILWDEKHKSISAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGLTNLNEKLVEHWERRMRNNTMLEDENKLLAFKLHQQDA 183 89999999***************************************************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.9E-42	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	32.983	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.00E-43	2	94	No hit	No description
SuperFamily	SSF55455	3.14E-30	2	109	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-30	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.1E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-30	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-30	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	9.0E-14	96	178	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	12.304	98	184	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MGRGKIEIKR IENSTNRQVT FSKRRNGLLK KAREISVLCD AEVGAVIFSS AGKLYDFCSP 60 KTSYVPYLFP LRFPVPALSK ILEKYQTNSG KILWDEKHKS ISAEIDRIKK ENDNMQIELR 120 HLKGEDLNSL QPKELIMIEE ALDNGLTNLN EKLVEHWERR MRNNTMLEDE NKLLAFKLHQ 180 QDAELSGSMR DLELGYHPDR DFEAQMPITF RVQPSHPNLQ DNN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-17	1	60	1	60	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-17	1	60	1	60	Myocyte-specific enhancer factor 2B
1tqe_R	2e-17	1	60	1	60	Myocyte-specific enhancer factor 2B
1tqe_S	2e-17	1	60	1	60	Myocyte-specific enhancer factor 2B
6byy_A	2e-17	1	60	1	60	MEF2 CHIMERA
6byy_B	2e-17	1	60	1	60	MEF2 CHIMERA
6byy_C	2e-17	1	60	1	60	MEF2 CHIMERA
6byy_D	2e-17	1	60	1	60	MEF2 CHIMERA
6bz1_A	2e-17	1	60	1	60	MEF2 CHIMERA
6bz1_B	2e-17	1	60	1	60	MEF2 CHIMERA
6bz1_C	2e-17	1	60	1	60	MEF2 CHIMERA
6bz1_D	2e-17	1	60	1	60	MEF2 CHIMERA
6c9l_A	2e-17	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_B	2e-17	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_C	2e-17	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_D	2e-17	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_E	2e-17	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_F	2e-17	1	60	1	60	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269\|PubMed:14704206}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462876955

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KU740322	1e-145	KU740322.1 Aristida purpurea PISTILLATA-like MADS-box transcription factor PI-2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025816957.1	1e-141	MADS-box transcription factor 2
Swissprot	Q40702	1e-137	MADS2_ORYSJ; MADS-box transcription factor 2
TrEMBL	A0A2S3HPC7	1e-139	A0A2S3HPC7_9POAL; Uncharacterized protein
TrEMBL	A0A3L6RIC4	1e-139	A0A3L6RIC4_PANMI; MADS-box transcription factor 2
STRING	Sb03g041860.1	1e-139	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3434	38	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	1e-68	MIKC_MADS family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]