PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462875793 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 137aa MW: 14767.5 Da PI: 10.8204 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 29.8 | 1.5e-09 | 3 | 37 | 15 | 55 |
AP2 15 WvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +v++ p ++r++lg+f+t+e Aa a+++a+ + +g 462875793 3 YVVR--NkP-----SARVWLGTFDTPEAAALAYDQAAFSARG 37 5544..333.....59*********************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 13.327 | 1 | 45 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-10 | 2 | 51 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.1E-6 | 8 | 37 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-11 | 8 | 47 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.1E-16 | 9 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MSYVVRNKPS ARVWLGTFDT PEAAALAYDQ AAFSARGDAA VLNFPVERVQ ESLDRSNGAR 60 RRPRLPSATL QAHPPAQANF PVDQRQQREL SNAAATAAGA APVLGRHVHR VLDNHGSTAA 120 ADDSARKLRH VGHVLQC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462875793 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 3e-17 | ethylene response factor 1 |