PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462867419

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HB-other

Protein Properties

Length: 1237aa MW: 135071 Da PI: 5.5034

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462867419	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.1	3.1e-18	29	86	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ 462867419 29 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 86 6789****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.435	23	87	IPR001356	Homeobox domain
SMART	SM00389	2.6E-15	25	91	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.11E-16	27	90	IPR009057	Homeodomain-like
CDD	cd00086	5.19E-16	28	88	No hit	No description
Pfam	PF00046	8.0E-16	29	86	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.1E-18	30	86	IPR009057	Homeodomain-like
CDD	cd14686	2.84E-6	80	119	No hit	No description
Pfam	PF08670	1.5E-26	467	563	IPR013978	MEKHLA
Pfam	PF08670	2.1E-23	566	644	IPR013978	MEKHLA
Pfam	PF08670	2.6E-48	1056	1198	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1237 aa Download sequence Send to blast
MAAMVAVGGG KDRSSPGGGG APQVDTGKYV RYTPEQVEAL ERVYSECPKP SSLRRQQLIR 60 ECPILSNIEP KQIKVWFQNR RCREKQRKEA SRLQTVNRKL TAMNKLLMEE NDRLQKQVSR 120 LVYENGYMRQ QLHNPSVATT DTSCESVVTS GQHRQQQNPA APRPQRDANN PAGEHRSEWA 180 DPGVDAYSAA ALRASPYAVP GLRASGFMGS QVILPLAHTL EHEEFLEVIR LEGHSLCHDE 240 VVLSRDMYLL QLCSGVDENA AGACAQLVFA PIDESFADDA PLLPSGFRVI PLDAKTFLEV 300 IRLEGHSLCH DEVVLSRDMY LLQLCSGVDE NAAGACAQLV FAPIDESFAD DAPLLPSGFR 360 VIPLDAKTDP PSGTRTLDLA STLEVGSGGT TRASSDASNA SNTRSVLTIA FQFSYENHLR 420 ESVAAMARQY VRTVVASVQR VAMAIAPSRL GGQLEMKQTP GSPEAQTLAR WIGRSYRFHT 480 GAELLRTETQ CTDSSLKALW QHSDSIMCCS LKAAPVFTFA NQAGLDMLET TLIALQDISL 540 EKILDDDGRK ALCTEYPKIM QQAALVFTFA NQAGLDMLET TLIALQDISL EKILDDDGRK 600 ALCTEYPKIM KQGFAYLPGG VCVSSMGRPV SYEQAVAWKV LSDDCLLAIA EENLAEFLSK 660 ATGTAVDWVQ MVGMKPGPDS IGIIAISHNC SVAETFKDCP SWYRDCRCVD VLHVIPTGNG 720 GTIELIYMQI CERLLTKLTG GPSGPITPNF VGAKVLPSRY ALRHIRQTVH ESSGEMPYGG 780 GRQPAVLRTF NVVNGFPDDG WLLMSSDGAE DVTIAINSFP NKLVGSHENS SQLFSAIGGG 840 ILCAKASMLL QNVTPALLVR FLREHRSEWA DPGVDAYSAA ALRASPYAVP GLLASGFMGS 900 QVILPLALTL EHEEFLEVIR LEGHSLCHDE VVLSRDMYLL QLCSGVDENA AGACTQLDPP 960 SGTHTLDLAS TLEVGSGGTT RASSDAANAS NTRSVLTIAF QFSYENHLRE SVAAMARQYV 1020 RTVVASVQRV AMAIAPSRLG GQLEMKQTPG SPEAQTLARW IGRSYRFHTG AELLRTETQC 1080 TDSSLKALWQ HSDSIMCCSL KAALVFTFAN QAGLDMLETT LIALQDISLE KILDDDGRKA 1140 LCTEYPKIMR QGFAYLPGGV CVSSMGRPVS YEQAVAWKVL SDDDTPHCLA FMFVNWSFVI 1200 YDERPPSLRL NWILDRIIRV VLALSEVACR NPNAFWM

Sequence ? help Back to Top

Protein Sequence Length: 1237 aa Download sequence Send to blast

MAAMVAVGGG KDRSSPGGGG APQVDTGKYV RYTPEQVEAL ERVYSECPKP SSLRRQQLIR  60
ECPILSNIEP KQIKVWFQNR RCREKQRKEA SRLQTVNRKL TAMNKLLMEE NDRLQKQVSR  120
LVYENGYMRQ QLHNPSVATT DTSCESVVTS GQHRQQQNPA APRPQRDANN PAGEHRSEWA  180
DPGVDAYSAA ALRASPYAVP GLRASGFMGS QVILPLAHTL EHEEFLEVIR LEGHSLCHDE  240
VVLSRDMYLL QLCSGVDENA AGACAQLVFA PIDESFADDA PLLPSGFRVI PLDAKTFLEV  300
IRLEGHSLCH DEVVLSRDMY LLQLCSGVDE NAAGACAQLV FAPIDESFAD DAPLLPSGFR  360
VIPLDAKTDP PSGTRTLDLA STLEVGSGGT TRASSDASNA SNTRSVLTIA FQFSYENHLR  420
ESVAAMARQY VRTVVASVQR VAMAIAPSRL GGQLEMKQTP GSPEAQTLAR WIGRSYRFHT  480
GAELLRTETQ CTDSSLKALW QHSDSIMCCS LKAAPVFTFA NQAGLDMLET TLIALQDISL  540
EKILDDDGRK ALCTEYPKIM QQAALVFTFA NQAGLDMLET TLIALQDISL EKILDDDGRK  600
ALCTEYPKIM KQGFAYLPGG VCVSSMGRPV SYEQAVAWKV LSDDCLLAIA EENLAEFLSK  660
ATGTAVDWVQ MVGMKPGPDS IGIIAISHNC SVAETFKDCP SWYRDCRCVD VLHVIPTGNG  720
GTIELIYMQI CERLLTKLTG GPSGPITPNF VGAKVLPSRY ALRHIRQTVH ESSGEMPYGG  780
GRQPAVLRTF NVVNGFPDDG WLLMSSDGAE DVTIAINSFP NKLVGSHENS SQLFSAIGGG  840
ILCAKASMLL QNVTPALLVR FLREHRSEWA DPGVDAYSAA ALRASPYAVP GLLASGFMGS  900
QVILPLALTL EHEEFLEVIR LEGHSLCHDE VVLSRDMYLL QLCSGVDENA AGACTQLDPP  960
SGTHTLDLAS TLEVGSGGTT RASSDAANAS NTRSVLTIAF QFSYENHLRE SVAAMARQYV  1020
RTVVASVQRV AMAIAPSRLG GQLEMKQTPG SPEAQTLARW IGRSYRFHTG AELLRTETQC  1080
TDSSLKALWQ HSDSIMCCSL KAALVFTFAN QAGLDMLETT LIALQDISLE KILDDDGRKA  1140
LCTEYPKIMR QGFAYLPGGV CVSSMGRPVS YEQAVAWKVL SDDDTPHCLA FMFVNWSFVI  1200
YDERPPSLRL NWILDRIIRV VLALSEVACR NPNAFWM

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462867419

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004982339.1	0.0	homeobox-leucine zipper protein HOX32
Swissprot	Q6AST1	0.0	HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBL	A0A1D6KX69	0.0	A0A1D6KX69_MAIZE; Homeobox-leucine zipper protein ATHB-14
STRING	Si034228m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP374	38	197

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34710.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Itoh J,Hibara K,Sato Y,Nagato Y Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice. Plant Physiol., 2008. 147(4): p. 1960-75 [PMID:18567825] Li YY, et al. Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice. Rice (N Y), 2016. 9(1): p. 46 [PMID:27624698]