PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462862148

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

WOX

Protein Properties

Length: 430aa MW: 45825.6 Da PI: 9.162

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462862148	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.2	1.9e-20	6	66	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+eql +Lee++++ r+p+a+e+++++++l +++ ++V++WFqN++a+e++ 462862148 6 STRWCPTPEQLMILEEMYRSgVRTPNAAEIQQITAHLayygRIEGKNVFYWFQNHKARERQ 66 58***************99************************************97 PP
2	Wus_type_Homeobox	119.9	1.1e-38	5	67	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++tRW+PtpeQ++iLee+y+sG+rtPn++eiq+ita+L+ yG+ie+kNVfyWFQN+kaRerq+ 462862148 5 PSTRWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNHKARERQR 67 689***********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.463	2	67	IPR001356	Homeobox domain
SMART	SM00389	6.8E-6	4	71	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.61E-11	4	70	IPR009057	Homeodomain-like
CDD	cd00086	5.65E-4	5	60	No hit	No description
Pfam	PF00046	4.0E-18	7	66	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.6E-7	8	66	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MPQTPSTRWC PTPEQLMILE EMYRSGVRTP NAAEIQQITA HLAYYGRIEG KNVFYWFQNH 60 KARERQRLRR RLCARHHHHH QPPPIPPPPA AGSSAAAVTV HPASYAAASF IQHPHLGGYM 120 GMGTLPVVQH PAAARGGGDK MATAPTGGAA FYSSGNNNNN NCSQQDWTTM SMEPNCTASP 180 GSSDDGFPLP PCCRRPLKTL DLFPTKSSTG GLRDECSSSK SSSFHEYGGY LGSLPVVQHP 240 AAAAAAGGGG NKMATAPAGG PALYSSGNNN NSSQGDWTTM SMEPNCTASP GSSDDGFPLP 300 PCCRRPLKTL DLFPTKSSTG GLRDECSSSK SSSGQRSSLG SSVCFSFPFA KFVGTPLSEN 360 DFIRFSRGRV AKSPIDYLLG ILISRLRGVE QVGSSTCRRP EIIGELIRNI IGVSPAIFSI 420 KYLSSSAAKT

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MPQTPSTRWC PTPEQLMILE EMYRSGVRTP NAAEIQQITA HLAYYGRIEG KNVFYWFQNH  60
KARERQRLRR RLCARHHHHH QPPPIPPPPA AGSSAAAVTV HPASYAAASF IQHPHLGGYM  120
GMGTLPVVQH PAAARGGGDK MATAPTGGAA FYSSGNNNNN NCSQQDWTTM SMEPNCTASP  180
GSSDDGFPLP PCCRRPLKTL DLFPTKSSTG GLRDECSSSK SSSFHEYGGY LGSLPVVQHP  240
AAAAAAGGGG NKMATAPAGG PALYSSGNNN NSSQGDWTTM SMEPNCTASP GSSDDGFPLP  300
PCCRRPLKTL DLFPTKSSTG GLRDECSSSK SSSGQRSSLG SSVCFSFPFA KFVGTPLSEN  360
DFIRFSRGRV AKSPIDYLLG ILISRLRGVE QVGSSTCRRP EIIGELIRNI IGVSPAIFSI  420
KYLSSSAAKT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in leaf formation. {ECO:0000269\|PubMed:15169755}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462862148

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ536578	4e-89	AJ536578.1 Zea mays mRNA for homeodomain transcription factor (prs gene).
GenBank	BT066120	4e-89	BT066120.1 Zea mays full-length cDNA clone ZM_BFb0350F05 mRNA, complete cds.
GenBank	EU969087	4e-89	EU969087.1 Zea mays clone 325979 WUSCHEL-related homeobox 3B mRNA, complete cds.
GenBank	JX469942	4e-89	JX469942.1 Zea mays subsp. mays clone UT3202 HB-type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001105160.1	8e-57	WUSCHEL-related homeobox 3A
Swissprot	Q70UV1	7e-58	WOX3A_MAIZE; WUSCHEL-related homeobox 3A
TrEMBL	B6TVS2	5e-56	B6TVS2_MAIZE; WUSCHEL-related homeobox 3B
STRING	Pavir.J34412.1.p	1e-56	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2177	38	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	2e-31	WOX family protein

Publications ? help Back to Top
Scanlon MJ NARROW SHEATH1 functions from two meristematic foci during founder-cell recruitment in maize leaf development. Development, 2000. 127(21): p. 4573-85 [PMID:11023861]