PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462851989

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

WOX

Protein Properties

Length: 275aa MW: 30838.5 Da PI: 6.1842

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462851989	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.7	1.5e-21	88	148	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ F + n +ps+++++++A +l ++te++V++WFqNrRa+ k+ 462851989 88 RQRWQPTPMQLQILENIFDQgNGTPSKQKIKDIAVELshdgQITETNVYNWFQNRRARSKR 148 89***************99************************************97 PP
2	Wus_type_Homeobox	94.7	7.8e-31	87	150	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RW Ptp Q++iLe+++++G tP+k++i++i+ eL++ G+i+++NV++WFQNr+aR+++kq 462851989 87 ARQRWQPTPMQLQILENIFDQGNGTPSKQKIKDIAVELSHDGQITETNVYNWFQNRRARSKRKQ 150 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-17	83	153	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.981	84	149	IPR001356	Homeobox domain
SMART	SM00389	1.6E-14	86	153	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.75E-18	87	151	IPR009057	Homeodomain-like
CDD	cd00086	3.62E-15	88	150	No hit	No description
Pfam	PF00046	3.3E-19	88	148	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MDRGKVCATA AEEMTGGGEL PLGHVKVMTD EQIEVLRKQI SIYATLCEQL VQMHRLLTDH 60 QESISGMSFS NLYCDPLIVP GGHKITARQR WQPTPMQLQI LENIFDQGNG TPSKQKIKDI 120 AVELSHDGQI TETNVYNWFQ NRRARSKRKQ AASLPNNAES EAEADEESLT DKKPKSDRSL 180 QESMAMSFHN ADRISEMHHF ETEQNQMGGM TYGSNDNNLR MSGSSGQMSL YENIMSNPRI 240 DHFLGKVESS RSFSHLQHGE GFGMFGGHVD ALSHP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	149	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462851989

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002456540.1	1e-155	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	1e-121	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A3L6FCZ1	1e-155	A0A3L6FCZ1_MAIZE; WUSCHEL-related homeobox 8
STRING	GRMZM2G038252_P02	1e-155	(Zea mays)
STRING	GRMZM2G069274_P01	1e-155	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	9e-53	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]