PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462846583

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

WOX

Protein Properties

Length: 267aa MW: 30057.6 Da PI: 6.4372

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462846583	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.8	2.8e-21	89	149	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ F + n +ps++++++++++l ++te++V++WFqNrRa+ k+ 462846583 89 RQRWQPTPMQLQILENIFDQgNGTPSKQKIKDITAELshhgQITETNVYNWFQNRRARSKR 149 89***************99************************************97 PP
2	Wus_type_Homeobox	101.3	6.9e-33	88	151	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RW Ptp Q++iLe+++++G tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq 462846583 88 ARQRWQPTPMQLQILENIFDQGNGTPSKQKIKDITAELSHHGQITETNVYNWFQNRRARSKRKQ 151 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.5E-17	84	156	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.673	85	150	IPR001356	Homeobox domain
SMART	SM00389	1.0E-13	87	154	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.34E-18	88	153	IPR009057	Homeodomain-like
Pfam	PF00046	5.0E-19	89	149	IPR001356	Homeobox domain
CDD	cd00086	3.93E-14	89	151	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MEWGKATATA AAEERAGGGE LPLGYVKVMT DEQIEVLRKQ ISIYATLCEQ LVQMHRLLTD 60 HQDSVSGMSF SNLYCDPLIL PGGHKITARQ RWQPTPMQLQ ILENIFDQGN GTPSKQKIKD 120 ITAELSHHGQ ITETNVYNWF QNRRARSKRK QAASLQNNAE SDAEADEDFL TDKKPKSDRH 180 LQESMAMSFH NADRISEMHH FETAQNQMGG MIYGSNDSNL RMSGSSGQMS LYETIMSNPR 240 TDHFPGKVEN SRSFSQLQHG EGFGMFG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	150	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462846583

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001288365.1	1e-154	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	1e-122	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A3L6FCZ1	1e-154	A0A3L6FCZ1_MAIZE; WUSCHEL-related homeobox 8
STRING	GRMZM2G038252_P02	1e-154	(Zea mays)
STRING	GRMZM2G069274_P01	1e-154	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	3e-56	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]