PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462844979 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 124aa MW: 13906.1 Da PI: 10.5452 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31 | 4.2e-10 | 1 | 22 | 35 | 56 |
HHCTS-HHHHHHHHHHHHHHHH CS Homeobox 35 kklgLterqVkvWFqNrRakek 56 k+l+L+ rqV vWFqNrRa+ k 462844979 1 KQLNLKPRQVEVWFQNRRARTK 22 69******************98 PP | |||||||
2 | HD-ZIP_I/II | 83 | 4.2e-27 | 1 | 57 | 34 | 91 |
HD-ZIP_I/II 34 reLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++ev+eLr +l 462844979 1 KQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQREVAELR-AL 57 69****************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00086 | 2.25E-6 | 1 | 25 | No hit | No description |
Pfam | PF00046 | 1.7E-7 | 1 | 22 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 11.758 | 1 | 24 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-8 | 1 | 27 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.48E-8 | 2 | 32 | IPR009057 | Homeodomain-like |
SMART | SM00340 | 7.5E-23 | 24 | 69 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 2.8E-11 | 24 | 58 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
KQLNLKPRQV EVWFQNRRAR TKLKQTEVDC EFLKRCCETL TEENRRLQRE VAELRALKLV 60 AAPHHYARMP PPTTLTMCPS CERVASAGAG DEAARAAPRP AAPPGPWGPV PVRPVFVDGP 120 ARRS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 16 | 24 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462844979 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU942452 | 1e-113 | EU942452.1 Zea mays clone 1503625 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002467488.1 | 2e-70 | homeobox-leucine zipper protein HOX1 | ||||
Swissprot | P46602 | 3e-46 | HAT3_ARATH; Homeobox-leucine zipper protein HAT3 | ||||
TrEMBL | C5WRJ5 | 4e-69 | C5WRJ5_SORBI; Uncharacterized protein | ||||
STRING | Sb01g029000.1 | 7e-70 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2587 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44910.1 | 3e-44 | homeobox-leucine zipper protein 4 |
Publications ? help Back to Top | |||
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