PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 4561 | ||||||||
Common Name | SELMODRAFT_404178, SELMODRAFT_407157, WOX8-1, WOX8-2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | WOX | ||||||||
Protein Properties | Length: 168aa MW: 19385.6 Da PI: 10.2522 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66 | 5.1e-21 | 68 | 128 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t++++ql++Le+lF++ n +p++++++e++++l +++e++V++WFqNr+a+ k+ 4561 68 RQRWTPSQNQLRILERLFKQgNGTPNRQRIKEITSELsqhgQISETNVYNWFQNRKARAKR 128 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 98.6 | 4.9e-32 | 67 | 130 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+++Q++iLe+l+k+G tPn+++i++it+eL+++G+i+++NV++WFQNrkaR ++kq 4561 67 SRQRWTPSQNQLRILERLFKQGNGTPNRQRIKEITSELSQHGQISETNVYNWFQNRKARAKRKQ 130 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.61E-17 | 63 | 133 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-15 | 63 | 133 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.127 | 64 | 129 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-12 | 66 | 133 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.3E-18 | 68 | 128 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.17E-10 | 68 | 130 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
QVMTEEQLET LRRQISVYAT ICQQLVEMHK ATISHQHTYN GLLLGHQSPA IQDSSPMLLG 60 IHHKPTSRQR WTPSQNQLRI LERLFKQGNG TPNRQRIKEI TSELSQHGQI SETNVYNWFQ 120 NRKARAKRKQ RHNNATPSTT TTSSQHKDAE SEVETDGDHS PEEKRSKV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 124 | 130 | RAKRKQR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00669 | PBM | Transfer from GRMZM2G038252 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002962413.1 | 1e-120 | WUSCHEL-related homeobox 13 | ||||
Refseq | XP_002965624.1 | 1e-120 | WUSCHEL-related homeobox 13 | ||||
Swissprot | Q5QMM3 | 3e-53 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | D8QUI1 | 1e-119 | D8QUI1_SELML; Uncharacterized protein WOX8-1 | ||||
STRING | EFJ33044 | 1e-120 | (Selaginella moellendorffii) | ||||
STRING | EFJ35876 | 1e-120 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1873 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 9e-44 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | 4561 |
Entrez Gene | 9634901 | 9660776 |
Publications ? help Back to Top | |||
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