PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

ERF

Protein Properties

Length: 424aa MW: 45147.6 Da PI: 6.5036

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
402810	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.8	2.7e-18	31	81	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +gr++AeIrdp+ + r +lg+f+tae+Aa a+++a+++++g+ 402810 31 RYRGVRRRP-WGRYAAEIRDPR----SkERRWLGTFDTAEDAAIAYDNAARAMRGA 81 69*****.******84....25999********************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	7.9E-11	31	80	IPR001471	AP2/ERF domain
CDD	cd00018	1.59E-22	31	88	No hit	No description
PROSITE profile	PS51032	22.431	31	88	IPR001471	AP2/ERF domain
SMART	SM00380	7.2E-36	31	94	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.16E-21	31	90	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	8.7E-30	31	89	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.3E-9	32	43	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.3E-9	54	70	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MKRARCDGSD GAAAAVVAKP SPLAPPAGEG RYRGVRRRPW GRYAAEIRDP RSKERRWLGT 60 FDTAEDAAIA YDNAARAMRG ARARTNFQYS SSSSSPSPSS PLASSSSSCS GCYSSGPTLS 120 QCSSNLAAPM APLPATMELV QRGPFLLPRI AQGFGQAPSQ PLQHHRWPIY DSSNMSSSPS 180 SSSNAKSSSI QPSLSTNIQS AATATTATTT TTTPIKSTGP LSPRDLCPDR HSSSSSTASF 240 ERHHDRSSSS TSSLWLQVAA QMQIQQQDHP PEQRLSPDEI CSGFIFDASN LNIPSLYEVS 300 CGLWSDTIAT TNSSSSSREF NLGTTTATPS SSCSAIQPQV TIAQQQQVAI PAASPLHDHR 360 EKEDRPNQDQ QNGGGGGGQV RNLTDEIIDD VESFSSSLLG DESTLMYDMQ LLQGLVCMQS 420 YLD*

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MKRARCDGSD GAAAAVVAKP SPLAPPAGEG RYRGVRRRPW GRYAAEIRDP RSKERRWLGT  60
FDTAEDAAIA YDNAARAMRG ARARTNFQYS SSSSSPSPSS PLASSSSSCS GCYSSGPTLS  120
QCSSNLAAPM APLPATMELV QRGPFLLPRI AQGFGQAPSQ PLQHHRWPIY DSSNMSSSPS  180
SSSNAKSSSI QPSLSTNIQS AATATTATTT TTTPIKSTGP LSPRDLCPDR HSSSSSTASF  240
ERHHDRSSSS TSSLWLQVAA QMQIQQQDHP PEQRLSPDEI CSGFIFDASN LNIPSLYEVS  300
CGLWSDTIAT TNSSSSSREF NLGTTTATPS SSCSAIQPQV TIAQQQQVAI PAASPLHDHR  360
EKEDRPNQDQ QNGGGGGGQV RNLTDEIIDD VESFSSSLLG DESTLMYDMQ LLQGLVCMQS  420
YLD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	4e-21	27	95	10	79	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002966856.1	0.0	uncharacterized protein DDB_G0271670
TrEMBL	D8QN45	0.0	D8QN45_SELML; Uncharacterized protein
STRING	EFJ38692	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12980.1	7e-07	ERF family protein

Link Out ? help Back to Top
Phytozome	402810
Entrez Gene	9632512

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]