PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 357570
Common NameARALYDRAFT_357570
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 334aa    MW: 38103.8 Da    PI: 4.5245
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
357570genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM51.82.8e-1681354127
     NAM   4 GfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratk....sgyWkatgkdkevlskk 96 
             ++rF+P+dee+ + +L +k++  +   l+  + i+ +d y+++P + +k   ++  e  + ++F++r + +a++ r+nr+++     g W++ g ++++++ +
  357570   8 CVRFNPSDEEIFQTFLIPKLALPEdapLPN-SLIEPFDFYHFDPITAEKpgsEFFPEG-NFWYFVTRTRLNARSVRPNRSIRtnpfLGKWRKYGVTEKITQ-G 107
             79*****************98777533333.56************9975333322244.4566777778888999****7665577899***********9.9 PP

     NAM  97 gelvglkktLvfykgrapkgektdWvmheyr 127
             +   g k+t  +    +++  kt W m ey+
  357570 108 EVFLGKKHTYDYL---NQQNLKTGWRMSEYE 135
             999******9999...344469********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.0355152IPR003441NAC domain
SuperFamilySSF1019417.32E-217152IPR003441NAC domain
PfamPF023655.5E-129135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAAQNFHCVR FNPSDEEIFQ TFLIPKLALP EDAPLPNSLI EPFDFYHFDP ITAEKPGSEF  60
FPEGNFWYFV TRTRLNARSV RPNRSIRTNP FLGKWRKYGV TEKITQGEVF LGKKHTYDYL  120
NQQNLKTGWR MSEYERPGNA FQQLVVVHLF YKTTLDQTLL DDQQHVQQGN EVHAHGNVVG  180
IDDVVDDVVD DVVDQDQIHG EQIVNNQQQE NEVHAHGNVV GVDHVVDQDQ IHGDVVEQIV  240
NNQQEENEVH AHGNVVGVDH VVDQDQIHGE QIVNNQQQGN EVHAHGNVVG IDDLIDQEVE  300
HHQIHGEQIV NNQNQAHGIV DDWYYIFGNL GDI*
Cis-element ? help Back to Top
SourceLink
PlantRegMap357570
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865962.20.0uncharacterized protein LOC9300309 isoform X1
TrEMBLD7MSW30.0D7MSW3_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_80013570.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1744279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.18e-11NAC domain containing protein 2