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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 322281 | ||||||||
Common Name | ARALYDRAFT_322281, GBF3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bZIP | ||||||||
Protein Properties | Length: 381aa MW: 40994.6 Da PI: 9.8555 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 72.6 | 5.7e-23 | 255 | 316 | 1 | 62 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN+aL++el++l+++++kl+ 322281 255 ERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENMALRSELNQLNEKSDKLRGA 316 89*******************************************************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 2.6E-31 | 1 | 95 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 9.8E-15 | 128 | 222 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 6.8E-20 | 248 | 315 | No hit | No description |
SMART | SM00338 | 1.2E-21 | 255 | 319 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.4E-21 | 255 | 317 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.403 | 257 | 320 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.81E-11 | 258 | 314 | No hit | No description |
CDD | cd14702 | 1.23E-22 | 260 | 311 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 262 | 277 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MGNSSEEPKP TKSDKPSSPP VDQTNVHVYP DWAAMQAYYG PRVAMPPYYN SALAASGHPP 60 PPYMWNPQHM MSPYGAPYAA VYPHGGGVYA HPGIPMGSQP QGQKTPPLAT PGTHLSIDTP 120 TKSTGNTDNG LMKKLKEFDG LAMSLGNGNP ENGADEHKRS RNSSETDGST DGSDGNTTGA 180 DEPKLKRSRE GTPTKDVKQL VQSSSFHSVS PSSGDTGVKL IQGSAILSPG VSANSNPFMS 240 QSLAMVPPET WPQNERELKR ERRKQSNRES ARRSRLRKQA ETEELARKVE ALTAENMALR 300 SELNQLNEKS DKLRGANATL LDKLKCSEPE KRVSGKMLSR VKNSGAGDKN KNQGDNDSKS 360 TSKLYQLLDT KPRANAVAAG * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 271 | 277 | RRSRLRK |
2 | 271 | 278 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8672884}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00318 | DAP | Transfer from AT2G46270 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 322281 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF370307 | 0.0 | AF370307.1 Arabidopsis thaliana putative G-box binding bZIP transcription factor (At2g46270) mRNA, complete cds. | |||
GenBank | AY063093 | 0.0 | AY063093.1 Arabidopsis thaliana putative G-box binding bZIP transcription factor (At2g46270) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002880229.1 | 0.0 | G-box-binding factor 3 isoform X1 | ||||
Swissprot | P42776 | 0.0 | GBF3_ARATH; G-box-binding factor 3 | ||||
TrEMBL | D7LDY1 | 0.0 | D7LDY1_ARALL; G-box binding factor 3 | ||||
STRING | fgenesh1_pm.C_scaffold_4002338 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3571 | 26 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46270.1 | 0.0 | G-box binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | 322281 |
Entrez Gene | 9316296 |
Publications ? help Back to Top | |||
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