PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 313994
Common NameARALYDRAFT_313994
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 413aa    MW: 45641.6 Da    PI: 9.4911
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
313994genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix539.1e-1719111273
  trihelix   2 WtkqevlaLiearremeerlrrgk.....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 
               Wt +e+++Liea++ ++er  r++                      ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r +
    313994  19 WTLNETMVLIEAKKMDDERRMRRSiglpppdqqqdsrsnssssnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERRRVE 111
               **************55555554434444445555555555555559999****************************************9843 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.621196IPR017877Myb-like domain
PfamPF138375.6E-1318111No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MADQSGGLVM MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPPPDQ QQDSRSNSSS  60
SNKPAELRWK WIEDYCWRKG CMRSQNQCND KWDNLMRDYK KVREYERRRV ESSFTAAESS  120
SSSAPAGETA SYWKMEKSER KERSLPSNML PQTYQALFEV VESKTLPSST AATAVTAAVA  180
AAINSGNGSG GGQIQKVIQQ GLGFVVPKVH QIIQQPVLLP LQPPPPPPPP PSQPSQPLPR  240
PLLLPPPPPP SFHAQPILPT VVIWFGLCLI TLLKKDSSSS SDSDTSEYSD TSPAKRRRTM  300
PTTTTGPSGG GGLEAEEVGR SKKDEETTVA AALSRSVSVI ANAIRESEER QDRRHKEVMN  360
VQERRLKIEE SNVEMNREGM NGLVEAINKL ASSIFALASS RHNNQHQGGP LP*
Cis-element ? help Back to Top
SourceLink
PlantRegMap313994
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0076540.0AC007654.2 Genomic sequence for Arabidopsis thaliana BAC T19E23 from chromosome I, complete sequence.
GenBankAK2293840.0AK229384.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-62-O19.
GenBankBT0205450.0BT020545.1 Arabidopsis thaliana At1g31310 gene, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_174416.20.0hydroxyproline-rich glycoprotein family protein
TrEMBLD7KL270.0D7KL27_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_10027740.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.11e-128Trihelix family protein