PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30179.m000558
Common NameRCOM_1628980
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 417aa    MW: 47337 Da    PI: 6.7161
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30179.m000558genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-1691139148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEd  l+ +++q+G+g +W + ++++g++R++k+c++rw++yl
    30179.m000558  91 KGPWSPEEDATLKAYIEQYGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 139
                      79*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-2182142IPR009057Homeodomain-like
PROSITE profilePS5129420.43586143IPR017930Myb domain
SMARTSM007171.2E-1290141IPR001005SANT/Myb domain
PfamPF002497.5E-1591139IPR001005SANT/Myb domain
SuperFamilySSF466899.31E-1992166IPR009057Homeodomain-like
CDDcd001676.83E-993139No hitNo description
Gene3DG3DSA:1.10.10.603.9E-5143164IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0035987Biological Processendodermal cell differentiation
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000021Biological Processregulation of ion homeostasis
GO:2000067Biological Processregulation of root morphogenesis
GO:0048226Cellular ComponentCasparian strip
GO:0000975Molecular Functionregulatory region DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MRETERTLAG KRKTLEKRSW IENSERRRRE KVRYKTFCPQ KVSHHPLFLP INFGHPFLIF  60
PNNLLAQTRR ERENIEEMGR APCCDKANVK KGPWSPEEDA TLKAYIEQYG TGGNWIALPQ  120
KIGLKRCGKS CRLRWLNYLR PNIKHGGFSE EEDNIICSLY ISIGSRRKQA NINRPSSAST  180
PAESNRIEDA SSSMALSNSA LERLQLHMQL QSLQNPLSVY NNPALWPKLH PLQEKLLLQS  240
MAETSNTIMQ QLLPTPQQGH EQKLDIYEQL SGSIALENQN YPRFDNPKVD GLENSFNAIT  300
SSDSSVPFNN GNSVADSIAM EGRANGVDQS VAAIQPVSTF QAELENFLSN KTSGFVSQED  360
QITEFDCFRE MNGSKDSLVW WSNDFETKSA SSNSWDSTSV LQSEGMFQDY HELGYNM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11028KRKTLEKRSWIENSERRRR
22429ERRRRE
32530RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMap30179.m000558
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103362e-63AC210336.1 Populus trichocarpa clone POP029-A04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015579086.10.0transcription factor MYB36
TrEMBLB9SJP40.0B9SJP4_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002526213.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-69myb domain protein 36