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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30167.m000856 | ||||||||
Common Name | LOC8272313, RCOM_1569020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | TCP | ||||||||
Protein Properties | Length: 394aa MW: 43846.6 Da PI: 9.8828 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 142.6 | 3e-44 | 92 | 239 | 2 | 136 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssasec..eaesssssasnsssg 88 + kk rhski+T++g+RdRRvRls+e+a++fFdLqd LGfdk+skt+eWLl ++ +aik+l+++ ssssa c + + +s++ +s + 30167.m000856 92 PFKKHRHSKICTAQGLRDRRVRLSIEIARKFFDLQDLLGFDKASKTLEWLLSKSRKAIKALAQNaegakslSSSSA-TCggGEIEGIVSKKDQSVA 186 569*************************************************************888875433333.4577444444444444444 PP TCP 89 ......kaaksaakskksqksaasalnlak.esrakarararertrekmriknkl 136 ++ ++ k + + +s+a+a+nl + esrakar+rarertr km+++++ 30167.m000856 187 atgscnEKGTK--KMRIAAASTAAASNLVAkESRAKARERARERTRVKMCTRKSH 239 56553233333..344444444445555545********************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.7E-41 | 94 | 235 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.14 | 94 | 152 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.241 | 215 | 232 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MFTSTNTVNP FMLLSSSSSS YDRSPYIIDH EVNNHYVFFN HHNPPIIPQI IDAVQNVEAS 60 NNAMISKQNC DVITGDQQQY DPSSVLLPVQ KPFKKHRHSK ICTAQGLRDR RVRLSIEIAR 120 KFFDLQDLLG FDKASKTLEW LLSKSRKAIK ALAQNAEGAK SLSSSSATCG GGEIEGIVSK 180 KDQSVAATGS CNEKGTKKMR IAAASTAAAS NLVAKESRAK ARERARERTR VKMCTRKSHE 240 SKNYTDMLNQ SRSSLLNQQH HHHQQACEKL SGCNDSVKVV AHHHDHQVEE LPANNSNLSS 300 SLAKGNIIEE SILIKRKLKP STILGYQQKQ STTMGYQQNV VMFKDISCSN NLPNLPQNWD 360 INSAIARSSF CAITNMNRPA GLHLYGKLWE AENT |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00215 | DAP | Transfer from AT1G67260 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30167.m000856 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002521201.1 | 0.0 | transcription factor CYCLOIDEA | ||||
TrEMBL | B9S5D2 | 0.0 | B9S5D2_RICCO; Uncharacterized protein | ||||
STRING | XP_002521201.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 4e-30 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | 30167.m000856 |
Entrez Gene | 8272313 |