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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30147.m014401 | ||||||||
Common Name | LOC8275484, RCOM_1503360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | LFY | ||||||||
Protein Properties | Length: 385aa MW: 43343.7 Da PI: 6.9356 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 656.9 | 2.7e-200 | 1 | 370 | 1 | 386 |
FLO_LFY 1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslsei 96 mdpeaf+aslfkwdpr+++ app+rlle a +++p++a ++ r+l +leelf+ayG+ry+t+akiaelGftv+tL++mkdeeld++m+sls+i 30147.m014401 1 MDPEAFTASLFKWDPRTVV-APPNRLLEAVAPPPQPAAAGYSVRPRELCGLEELFQAYGIRYYTAAKIAELGFTVNTLLNMKDEELDEMMNSLSQI 95 9**************9876.77899999998888888888888888899*********************************************** PP FLO_LFY 97 frldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskkk 192 fr+dllvGeryGikaavraerrrleeee +++rr l+s d+ ++ldalsqeglseepvq+ekeaagsgg+g ++e+va e++k+++ + 30147.m014401 96 FRWDLLVGERYGIKAAVRAERRRLEEEE-DSRRRLLISGDT-NTLDALSQEGLSEEPVQQEKEAAGSGGGG--TWEVVAGGG-----ERTKQQQ-Q 181 **************************88.777777888886.57***********************9999..999999983.....2333322.2 PP FLO_LFY 193 qkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfry 288 ++rk +++ + d d++ee+ +++++g +g erqrehPfivtepgevargkknGLDYLf+LyeqCr+fL+qvq+iakerGekcPtkvtnqvfry 30147.m014401 182 RRRKGQRK---AVDIDNDEEN--ENDENGGGGYERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQNIAKERGEKCPTKVTNQVFRY 272 22222222...3444444444..4445566789*************************************************************** PP FLO_LFY 289 akkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlersk 384 akkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdida+fnahprL+iWYvPtkLrqLCh+er++ 30147.m014401 273 AKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRAFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLAIWYVPTKLRQLCHAERNS 368 **********************************************************************************************99 PP FLO_LFY 385 as 386 a+ 30147.m014401 369 AT 370 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 7.4E-209 | 1 | 369 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0031490 | Molecular Function | chromatin DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MDPEAFTASL FKWDPRTVVA PPNRLLEAVA PPPQPAAAGY SVRPRELCGL EELFQAYGIR 60 YYTAAKIAEL GFTVNTLLNM KDEELDEMMN SLSQIFRWDL LVGERYGIKA AVRAERRRLE 120 EEEDSRRRLL ISGDTNTLDA LSQEGLSEEP VQQEKEAAGS GGGGTWEVVA GGGERTKQQQ 180 QRRRKGQRKA VDIDNDEENE NDENGGGGYE RQREHPFIVT EPGEVARGKK NGLDYLFHLY 240 EQCRDFLIQV QNIAKERGEK CPTKVTNQVF RYAKKAGASY INKPKMRHYV HCYALHCLDE 300 EASNALRRAF KERGENVGAW RQACYKPLVA IAARQGWDID AIFNAHPRLA IWYVPTKLRQ 360 LCHAERNSAT ASSSVSGGGG DHLPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2vy1_A | 1e-112 | 208 | 385 | 2 | 194 | PROTEIN LEAFY |
2vy2_A | 1e-112 | 208 | 385 | 2 | 194 | PROTEIN LEAFY |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00095 | SELEX | Transfer from AT5G61850 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30147.m014401 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002511083.1 | 0.0 | floricaula/leafy homolog | ||||
Swissprot | O04064 | 0.0 | FLLH_POPTR; Floricaula/leafy homolog | ||||
TrEMBL | B9RA58 | 0.0 | B9RA58_RICCO; Floricaula protein, putative | ||||
STRING | XP_002511083.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8033 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 1e-109 | floral meristem identity control protein LEAFY (LFY) |
Link Out ? help Back to Top | |
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Phytozome | 30147.m014401 |
Entrez Gene | 8275484 |
Publications ? help Back to Top | |||
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