PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30128.m008784
Common NameRCOM_1431990
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 1025aa    MW: 114688 Da    PI: 9.5781
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30128.m008784genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.4e-084681340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                     rW++ E +++++a + +G + Wk++a+++  +R+ +++
    30128.m008784 46 RWSEAELQRFYKAYRVHGVD-WKKVAAEVA-NRSVEMV 81
                     9*******************.********9.**98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.8E-54391IPR001005SANT/Myb domain
SuperFamilySSF466892.69E-84592IPR009057Homeodomain-like
CDDcd001679.40E-64689No hitNo description
PfamPF002491.1E-64681IPR001005SANT/Myb domain
SMARTSM011357.9E-59621722IPR033471DIRP domain
PfamPF065845.4E-33621721IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1025 aa     Download sequence    Send to blast
MPPARKKSVN KRSLNDVSPG KAVKNSIKNK EQATGKRRLT DKLGPRWSEA ELQRFYKAYR  60
VHGVDWKKVA AEVANRSVEM VHALYKMNKA YLSLPEGTAS VVGLIAMMTD HYSTLEVSDS  120
EGESNDVPGM IRRPQKCKRA KVQVSASKEV LLQSHSIAST DGYLSLLKKG TFNGDQPRAV  180
GKRTPRVAIS RENFESLKKK DQKSENDDND DEVAHVAALA LTEALQRGSS PQVSRTPHRR  240
TERIESSSVR GWDKMSKSFH MKLHDTSADE EWIECHTRRG AHSGTYARDT SSLADMEGMG  300
TVEVHRKGKK FYGHKVKVEE ILNCQSDDGG EACSGTEEGP KVNGIKGKVD IEELNVKIDK  360
SSPQVRKKRR DKHFSGDEFS ALDALRTLAS LSVMESESSV QLNEERPAVN MDDKCSIPET  420
TSTIHCKDRA KPLRRNQKVL HGLGEVEDTT SRNAKLGRHT TAYAKPVSVA NKRPQSISNN  480
TKKRKRSLIS KTVDEEEIIS TLKGKLTCQA SAVSEQAKAV GVSVGSFSGD RASSANDVAI  540
STEQVPVASQ VTLPTRKTSR RKRDLKRAFN PKDGYSSENI LKTRVNRYSI SGKDAVLHFK  600
EKLSSCLSSP MVRRWCTFEW FYSAIDYPWF AKREFVEYLN HVGLGHIPRL TRVEWGVIRS  660
SLGKPRRFSE HFLTEEREKL KQYRDSVRKH YTELSTGIRE GLPTDLAKPL SVGERVIALH  720
PKTRELYDGS VLTVDHDRCR IQFDCPEVGV EFVKDIDCMP LNPYDNMPEA LRRRTFAFIS  780
KELQVNGHPT RHLENLQTPA NMLVKQVQVR IRMLSNVSFP SMFEVLYFFM DCSFSGVLPS  840
THHNLVSQES GSTVVEIVRG SRKKAHTMID AAVQAISSVK EGEDAFVKIE EALDSIDKRQ  900
VGSESKLQVI RSSEQGNSIL LHNNQLISST SELQVITNAC APKSHDNSEK TEAVIPSELI  960
TSCVAALLMI QTCTERQYPP ADVAQLIDSA VTSLHPCCPQ NLPIYREIQM CMGRIKTQIL  1020
ALIPT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1365371RKKRRDK
2366371KKRRDK
3481486KKRKRS
Cis-element ? help Back to Top
SourceLink
PlantRegMap30128.m008784
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015570600.10.0protein ALWAYS EARLY 2 isoform X2
TrEMBLB9RF700.0B9RF70_RICCO; Always early, putative
STRINGXP_002512389.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17833369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding