PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

M-type_MADS

Protein Properties

Length: 226aa MW: 25589.5 Da PI: 8.6033

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30099.m001671	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	68.3	7.4e-22	35	82	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i+ k+ qvtfskRr+g++KKA+EL++LC++e+a+++fs+ +k + + 30099.m001671 35 KISKKTHLQVTFSKRRAGLFKKASELCTLCGVEIAILVFSPANKAFSF 82 799**************************************9997766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	23.338	26	86	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.5E-31	26	85	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.15E-33	27	95	No hit	No description
SuperFamily	SSF55455	1.02E-26	27	112	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-17	28	48	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-23	35	82	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-17	48	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-17	63	84	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009559	Biological Process	embryo sac central cell differentiation
GO:0043078	Cellular Component	polar nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MLAPRNTKVI DYFFLSFNNG EERVYLGRQK IAIEKISKKT HLQVTFSKRR AGLFKKASEL 60 CTLCGVEIAI LVFSPANKAF SFGHPEVESV LDRFLARHPL PTSSSAHQLI EAHRNANVCE 120 LNMQLTHTLN QMEDEKKKGE LLDQIRKSSQ NMCWWEAPID ELGMHELEQL RFALEELKKN 180 VTKQISKILI NSGSSLPFSS GNVIGHISDY ESKPNVAPCI PCVNKH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	4e-15	26	112	1	87	MEF2C
5f28_B	4e-15	26	112	1	87	MEF2C
5f28_C	4e-15	26	112	1	87	MEF2C
5f28_D	4e-15	26	112	1	87	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269\|PubMed:18599653, ECO:0000269\|PubMed:18713950}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30099.m001671

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002522084.2	1e-163	agamous-like MADS-box protein AGL61
Swissprot	Q4PSU4	2e-58	AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBL	B9S7W8	1e-167	B9S7W8_RICCO; Mads box protein, putative
STRING	XP_002522084.1	1e-168	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF128	33	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	7e-61	AGAMOUS-like 61

Link Out ? help Back to Top
Phytozome	30099.m001671

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]