PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30076.m004574 | ||||||||
Common Name | LOC8265895, RCOM_1343940 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | SBP | ||||||||
Protein Properties | Length: 1012aa MW: 111889 Da PI: 6.8376 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.8 | 1.2e-41 | 156 | 233 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C adls+ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ 30076.m004574 156 VCQVEDCGADLSSAKDYHRRHKVCEMHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 233 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.9E-33 | 151 | 218 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.3 | 154 | 231 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.37E-39 | 155 | 236 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.1E-30 | 157 | 230 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 1.3E-5 | 783 | 933 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 7.1E-6 | 789 | 931 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 6.76E-5 | 790 | 897 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1012 aa Download sequence Send to blast |
MEARFGGEAQ AHHFYGMSAA DLRAVEKRSL EWDLNDWKWD GDLFIASPLN PVPSSNMSRQ 60 FFPIATGTPT NGNSSNSSSS CSDEVNLGIE KGKRELEKRR RVIVIEDDNL NDEGVGSLSL 120 KLGGHGFPVS EREIGNWEGN SGKKTKLVGG SMSRAVCQVE DCGADLSSAK DYHRRHKVCE 180 MHSKASKALV GNVMQRFCQQ CSRFHVLQEF DEGKRSCRRR LAGHNKRRRK TNPDTVGNAS 240 TLNDEQTSSY LLISLLKILS NMHSNRSDQV TDQDLLSHLL RSLASQSMEH GGKKLSGLLQ 300 EPRALLNGGT SFRNSEVFLT FILNALGLLR SLKLHLIVPF SGMSQRVLCS HGANGPNVQT 360 SSSMKPSIPN NYPAYSEVRD STAVQVKMNN FDLNDIYIDS DDGAEDIERS PVPTNMGTSS 420 LDCPSWIQQD SHQSSPPQTS GNSDSASAQS PSSSSGDAQS RTDRIIFKLF GKEPNDFPLV 480 LRAQILDWLS HSPTDIESYI RPGCVILTIY LRQAEAAWEE LCCNLSSSLS RLLDVSDNAF 540 WRTGWAYIRV QHQIAFIYNG QVVVDTSLPL RSNNHSKIAS VKPIAIPAAE RAQFVIKGIN 600 LSRPATRLLC AVEGKYMLQE NTEEMMDDID NINAHDELQC IKFCCSIPMV SGRGFIEIED 660 HGFSSSFFPF IVAEEDVCLE IRMLEGTLEF VGTDADLGGS GKIEAKNQAM DFINEIGWLL 720 HRSQLHSRLG HLNPCTDLFP LSRFKWLMEF SMDHEWCAVV TKLLNILHNG IVGTGEHSSL 780 NLALSEMGLL HRAVRKNSRS LVELLLRYVP EKSGPGNKLP VDGSHVNFLF RPDVTGPAGL 840 TPLHIAAGKD GSEDVLDALT DDPGMVGVEA WKKAHDSTGF TPEGYARLRG HYSYIHLVQK 900 KINKRPAAGH VVLDIPGTLS ECNVNQKQNE GVTASFEVGQ PAVRSIQRSC KLCHQKLDYG 960 TAGRSLLYRP AMLSMVAIAA VCVCVALLFK SCPEVVYVFR PFRWELLDFG TS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-31 | 150 | 230 | 4 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 97 | 101 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00633 | PBM | Transfer from PK06791.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30076.m004574 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002515202.1 | 0.0 | squamosa promoter-binding-like protein 1 isoform X1 | ||||
Swissprot | Q9S7P5 | 0.0 | SPL12_ARATH; Squamosa promoter-binding-like protein 12 | ||||
TrEMBL | B9RN63 | 0.0 | B9RN63_RICCO; Uncharacterized protein | ||||
STRING | XP_002515202.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1539 | 34 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47070.1 | 0.0 | squamosa promoter binding protein-like 1 |
Link Out ? help Back to Top | |
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Phytozome | 30076.m004574 |
Entrez Gene | 8265895 |
Publications ? help Back to Top | |||
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