![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 30061.m000294 | ||||||||
Common Name | LOC8278994, RCOM_1293650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 329aa MW: 37198 Da PI: 7.6788 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.3 | 3.1e-06 | 169 | 188 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r nL+ H+ 30061.m000294 169 FSCPVCLKTFNRYNNLQMHM 188 89*****************9 PP | |||||||
2 | zf-C2H2 | 16.6 | 2.3e-05 | 253 | 275 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +CgksF k + ++H +++ 30061.m000294 253 FMCRKCGKSFAVKGDWRTHEKNC 275 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.41E-5 | 162 | 191 | No hit | No description |
SMART | SM00355 | 0.18 | 169 | 191 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 169 | 188 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.18 | 169 | 196 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 171 | 191 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.41E-6 | 237 | 273 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.8E-6 | 249 | 273 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 37 | 253 | 273 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.787 | 253 | 273 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 160 | 279 | 302 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 329 aa Download sequence Send to blast |
MPDPCSNLFS GWFNLMALHP HYTGFTTSYS NPSPTNFNIY SNNNIFNNKS SFQSQPYPSL 60 TSQKEPPHLV EYLSPPRQQE EHHECSSSSM EEEKNMKRDS DNDGETLTVA LNIGLPSPTS 120 DLGPRVSPPL IEVEEGNAVS GYPLPIQKLS KGQFWIPSPA QILIGPTQFS CPVCLKTFNR 180 YNNLQMHMWG HGSQYRKGPD SLRGTQPTAM LRLPCYCCAP GCKHNIDHPR ARPLKDFRTL 240 QTHYKRKHGI KPFMCRKCGK SFAVKGDWRT HEKNCGKVWY CVCGSDFKHK RSLKDHIKAF 300 GHGHAALGID CLEEEDEPAS EIELDEESL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 30061.m000294 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002526768.1 | 0.0 | zinc finger protein WIP2 | ||||
Swissprot | Q9SVY1 | 1e-121 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | B9SL99 | 0.0 | B9SL99_RICCO; TRANSPARENT TESTA 1 protein, putative | ||||
STRING | XP_002526768.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF170 | 34 | 289 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-122 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 30061.m000294 |
Entrez Gene | 8278994 |
Publications ? help Back to Top | |||
---|---|---|---|
|