PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29912.m005397
Common NameLOC8272563, RCOM_1047180
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HSF
Protein Properties Length: 478aa    MW: 54185.4 Da    PI: 4.6633
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29912.m005397genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.55.8e-351392302102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Flkk++e++ed++++ ++swsen  sf+v+d +ef+k++LpkyFkh nf+SF+RQLn+YgF+k++ ++         weF+++ F+ gkk+ll++i
  29912.m005397 139 FLKKTFEMVEDPDTDCTVSWSENRGSFIVWDAHEFSKHLLPKYFKHCNFSSFIRQLNTYGFRKIDPDR---------WEFANEGFQGGKKHLLKNI 225
                    9****************************************************************999.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    kr+++
  29912.m005397 226 KRRSR 230
                    ***86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.32E-33134228IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-57135228IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.5E-37135228IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.7E-31139228IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-17139162IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-17177189IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340178202IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-17190202IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MVAPDTSSCG GGGDFSPTFS ATFLPIPLQE STEPIVEKDD KFVQPRESNV EKDDKFVESV  60
IAIKKEVMPL VPDDSSSRVV AIKEEEEEEE EDEVGKEEKD TGDFRDSVTN NNNGSSSSSS  120
SVDLPKPMEG LHENGPPPFL KKTFEMVEDP DTDCTVSWSE NRGSFIVWDA HEFSKHLLPK  180
YFKHCNFSSF IRQLNTYGFR KIDPDRWEFA NEGFQGGKKH LLKNIKRRSR HSRPQQGAAS  240
IDADSAKPGL EAELENLKND HDLLRVEILK LKQQREDSDN QLSIVEQRIR YAETKQLQMF  300
IFFAKATKNR SFIQNLIHKK KQQRELDGSE FVKKRRLVPD QTQTQVPESP NAVDASQSVI  360
CRNQAQKHLA TMQTELTEML KENTETNPMS KLLEAPLTDG FCVEDHKANV MCSNGQDSVY  420
HLMSETLLDD NVISEDSVDE DSVVNDSTFY LELEDLIGKP RTWGGYVTHE LVEHAGCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-231142284129Heat shock factor protein 1
5d5v_B1e-231142284129Heat shock factor protein 1
5d5v_D1e-231142284129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221227LKNIKRR
2318335KKKQQRELDGSEFVKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap29912.m005397
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002514126.10.0heat stress transcription factor A-2
TrEMBLB9RK820.0B9RK82_RICCO; Heat shock factor protein HSF30, putative
STRINGXP_002514126.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106762938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-83heat shock transcription factor A2