PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29912.m005337
Common NameRCOM_1047040
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 502aa    MW: 56140.5 Da    PI: 9.4776
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29912.m005337genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-12318362554
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    h + Er+RR++iN++fe Lr+llP+       K +Ka++L+++ eY+  L
  29912.m005337 318 HMISERKRREKINESFEALRKLLPPE-----AKKDKASVLTRTREYLTLL 362
                    8899*********************6.....599************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.173313362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-17314383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.67E-12315367No hitNo description
Gene3DG3DSA:4.10.280.101.8E-15316380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-10318362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-12319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MAFINNQPYR ELSQSELLRL TSVAVQRQFY QINMENAMMS WFSEYSIPQQ SLSQLRELSQ  60
ALDPNPPSSS SSSLRSLDSP DSSSFMFNMP TTSNIAEIPL EVRPLQPIPS ASSSIQQVLQ  120
FLQPTQSTTS SVQPAMQSFQ QVPSTTTSPL RQAMQPLQQV PSTTTSPVHQ QAMQSLPLIP  180
SASTSPHQQA MQSLPLIPSA STSPHQQAMQ AFALSRNIQL PSQESEDAAM TRAILAVLTS  240
PSSSTSSSTP NLPYTHYHGV SQQRGSAFKS YLAPRIPMRA SLHRQNLLKR SITYYRNLNI  300
ARREHMTANR PTTTQLHHMI SERKRREKIN ESFEALRKLL PPEAKKDKAS VLTRTREYLT  360
LLKTQVAELS QRNQQLEAEL LPAAIEAHAG EVIAENQQSG SWEGRVEVRI TNVSESTSED  420
ERIINLLIVL RGECPVSDFV IRILEFLKQV NNANLMSVDA NTSRGASRSL NRVILRLRIE  480
GNEWDEAAFQ EAVRRVVADL AQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321326ERKRRE
2322327RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMap29912.m005337
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015571697.10.0putative transcription factor bHLH041
TrEMBLB9RK780.0B9RK78_RICCO; DNA binding protein, putative
STRINGXP_002514122.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.17e-58bHLH family protein