PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

MIKC_MADS

Protein Properties

Length: 347aa MW: 39506.6 Da PI: 5.3938

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29908.m005982	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88	5.1e-28	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l +s 29908.m005982 9 KRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58 79********************************************9997 PP
2	K-box	26.3	3.1e-10	122	190	11	79
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 +++ e+lqqe++ L+++i+ ++++R + + L+ sl eL++ e++L + l+++ ++K+ ll +++++ 29908.m005982 122 NSDVEELQQEVTSLQQQIQIAEEQIRIYEPDPLKLPSLGELESCEKNLVDTLTRVMQRKEFLLSNHLSY 190 67889**********************************************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.941	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.2E-38	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.03E-30	2	83	IPR002100	Transcription factor, MADS-box
CDD	cd00265	5.75E-37	2	75	No hit	No description
PRINTS	PR00404	3.8E-26	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.8E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.8E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.8E-26	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	1.2E-6	124	189	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010152	Biological Process	pollen maturation
GO:0055114	Biological Process	oxidation-reduction process
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0032440	Molecular Function	2-alkenal reductase [NAD(P)] activity
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGR 60 KRIEDVFARY VNLPDQEREH ALYPERSRNP MFYLMQYLLR TLHQLKSEND IALQLANPTA 120 INSDVEELQQ EVTSLQQQIQ IAEEQIRIYE PDPLKLPSLG ELESCEKNLV DTLTRVMQRK 180 EFLLSNHLSY DPSSMQGIPN SFENDVIGWL PDGSQNHAQM LPTPAPQIFD TSASLNNLRD 240 ISSTMYDPLL QGSSSNGETH RMGECHVTNP NDGNFSPWPQ LYTSTGLNST AISSSLYPHQ 300 LQHGMVGPNI PDMMPREQME IPMDAEHVHM ENVAANYENN KVPRLNG

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGR  60
KRIEDVFARY VNLPDQEREH ALYPERSRNP MFYLMQYLLR TLHQLKSEND IALQLANPTA  120
INSDVEELQQ EVTSLQQQIQ IAEEQIRIYE PDPLKLPSLG ELESCEKNLV DTLTRVMQRK  180
EFLLSNHLSY DPSSMQGIPN SFENDVIGWL PDGSQNHAQM LPTPAPQIFD TSASLNNLRD  240
ISSTMYDPLL QGSSSNGETH RMGECHVTNP NDGNFSPWPQ LYTSTGLNST AISSSLYPHQ  300
LQHGMVGPNI PDMMPREQME IPMDAEHVHM ENVAANYENN KVPRLNG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	8e-16	1	58	1	58	Myocyte-specific enhancer factor 2B
1tqe_Q	8e-16	1	58	1	58	Myocyte-specific enhancer factor 2B
1tqe_R	8e-16	1	58	1	58	Myocyte-specific enhancer factor 2B
1tqe_S	8e-16	1	58	1	58	Myocyte-specific enhancer factor 2B
3mu6_A	5e-16	2	70	1	68	Myocyte-specific enhancer factor 2A
3mu6_B	5e-16	2	70	1	68	Myocyte-specific enhancer factor 2A
3mu6_C	5e-16	2	70	1	68	Myocyte-specific enhancer factor 2A
3mu6_D	5e-16	2	70	1	68	Myocyte-specific enhancer factor 2A
5f28_A	9e-16	1	81	1	82	MEF2C
5f28_B	9e-16	1	81	1	82	MEF2C
5f28_C	9e-16	1	81	1	82	MEF2C
5f28_D	9e-16	1	81	1	82	MEF2C
6c9l_A	8e-16	1	58	1	58	Myocyte-specific enhancer factor 2B
6c9l_B	8e-16	1	58	1	58	Myocyte-specific enhancer factor 2B
6c9l_C	8e-16	1	58	1	58	Myocyte-specific enhancer factor 2B
6c9l_D	8e-16	1	58	1	58	Myocyte-specific enhancer factor 2B
6c9l_E	8e-16	1	58	1	58	Myocyte-specific enhancer factor 2B
6c9l_F	8e-16	1	58	1	58	Myocyte-specific enhancer factor 2B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29908.m005982

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015571470.1	0.0	agamous-like MADS-box protein AGL104
Swissprot	Q9LM46	1e-126	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	B9RJF3	0.0	B9RJF3_RICCO; Mads box protein, putative
STRING	XP_002513872.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8525	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	1e-119	AGAMOUS-like 104

Link Out ? help Back to Top
Phytozome	29908.m005982

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]