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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29883.m002023 | ||||||||
Common Name | LOC8274758, RCOM_0993030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | bHLH | ||||||||
Protein Properties | Length: 503aa MW: 55500.4 Da PI: 6.045 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.7 | 8.8e-13 | 357 | 403 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq 29883.m002023 357 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 403 799***********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 7.3E-41 | 47 | 231 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.831 | 353 | 402 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-18 | 356 | 423 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.03E-14 | 356 | 407 | No hit | No description |
Pfam | PF00010 | 2.9E-10 | 357 | 403 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.0E-18 | 357 | 423 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.1E-15 | 359 | 408 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0032440 | Molecular Function | 2-alkenal reductase [NAD(P)] activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MGEKFWAKED KAMVESIIGA EACEFLISSA SNNVLADLVS PPSSLGLQEG LNQLVDGSNW 60 NYAIFWCASS LKSGGSILTW GEGICRNQKC GAGEGNATGD RRLEGVENGN ESKKRVLQKL 120 HSCFNASDGD NYAANLNGVS DVEMFYLTSM YFTFRCDSAY GPAESYKSGR SIWASDVITC 180 LEHYHLRSFL ARSAGFQTLA FFPVKSGVVE LGSIKSIPEE HIIGERAKTI FGGANALQAK 240 TCPKIFGREL SLGSSKSRSI SINFSPKVED DLIFTSEYPE AIGTNPVNGS TSSGCPSDIN 300 EAKLFPHLNQ MNVPGFNTET MVTGLEQPKE DLSPHQNERK PRKRGRKPAN GREEPLNHVE 360 AERQRREKLN QRFYALRAVV PNISKMDKAS LLGDAITYIT DLQTKIRVLE TEKEMSNNNQ 420 NQFPVTEIDF QARQEDAVVR VSCPLDVHPV SSILESFREH QVTAQECNMS AAENDKIIHT 480 FSIRTQGGAA EQLKEKLEAV FSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 8e-29 | 351 | 435 | 2 | 83 | Transcription factor MYC2 |
5gnj_B | 8e-29 | 351 | 435 | 2 | 83 | Transcription factor MYC2 |
5gnj_E | 8e-29 | 351 | 435 | 2 | 83 | Transcription factor MYC2 |
5gnj_F | 8e-29 | 351 | 435 | 2 | 83 | Transcription factor MYC2 |
5gnj_G | 8e-29 | 351 | 435 | 2 | 83 | Transcription factor MYC2 |
5gnj_I | 8e-29 | 351 | 435 | 2 | 83 | Transcription factor MYC2 |
5gnj_M | 8e-29 | 351 | 435 | 2 | 83 | Transcription factor MYC2 |
5gnj_N | 8e-29 | 351 | 435 | 2 | 83 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 338 | 346 | RKPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00099 | PBM | Transfer from AT4G16430 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29883.m002023 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002521010.1 | 0.0 | transcription factor bHLH3 | ||||
Swissprot | A0A3Q7H216 | 0.0 | MTB3_SOLLC; Transcription factor MTB3 | ||||
TrEMBL | B9S4V3 | 0.0 | B9S4V3_RICCO; DNA binding protein, putative | ||||
STRING | XP_002521010.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8263 | 34 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16430.1 | 1e-173 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 29883.m002023 |
Entrez Gene | 8274758 |
Publications ? help Back to Top | |||
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