PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

MIKC_MADS

Protein Properties

Length: 235aa MW: 27758.5 Da PI: 10.0288

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29782.m000119	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.9	2e-26	9	60	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.EEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.klyeyss 51 k+ien +nrqvt+skRrngi+KKA+EL vLCda+v++i+fs++g k++e++s 29782.m000119 9 KKIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNSGrKFHEFIS 60 68*****************************************956999975 PP
2	K-box	86.9	4.2e-29	72	170	1	99
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 yqk+ g +l+ +++e++q +l+kL++ +++L+r +R+++GedL++Ls+ eL+ Leq++ +l iR++K++++ +q+++ +kke++l e++++L + 29782.m000119 72 YQKTLGIDLWITHYERMQDHLKKLNDINNKLRRDIRQRMGEDLNDLSFDELRGLEQRMAPALHMIRERKYHFIETQTNTKRKKERNLVERHRELLQ 167 78899999**************************************************************************************99 PP K-box 97 kle 99 ++e 29782.m000119 168 RYE 170 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	8.7E-38	1	61	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	29.114	1	62	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.98E-36	2	95	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.00E-37	2	81	No hit	No description
PRINTS	PR00404	3.5E-24	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-22	10	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.5E-24	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.5E-24	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	1.5E-20	83	169	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	15.071	85	175	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010093	Biological Process	specification of floral organ identity
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MGRGKIEIKK IENPTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMFSN SGRKFHEFIS 60 PGTTTKKIFD QYQKTLGIDL WITHYERMQD HLKKLNDINN KLRRDIRQRM GEDLNDLSFD 120 ELRGLEQRMA PALHMIRERK YHFIETQTNT KRKKERNLVE RHRELLQRYE ANCEDPQYGL 180 VDYEGDYESA IALANGASNL YSFRLHHGHP EPPNLHXTGK SHIFILISLH KHNLI

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00077	ChIP-seq	Transfer from AT3G54340	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29782.m000119

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002533305.1	1e-175	floral homeotic protein DEFICIENS
Swissprot	Q003J2	1e-117	TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBL	B9T4Y6	1e-174	B9T4Y6_RICCO; Floral homeotic protein DEFICIENS, putative
STRING	XP_002533305.1	1e-175	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2735	33	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	2e-72	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	29782.m000119
Entrez Gene	8273018

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]