PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

ERF

Protein Properties

Length: 225aa MW: 25555.5 Da PI: 4.9509

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29584.m000234	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.4	1.8e-18	96	146	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+++AeIrd + ng r++lg+f++ae Aa a+++a+ +++g 29584.m000234 96 SYRGVRKRP-WGKYAAEIRDSTRNG--IRVWLGTFDSAEAAALAYDQAAFSMRG 146 69*****.******44465..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	5.08E-19	95	155	No hit	No description
Pfam	PF00847	8.0E-13	96	146	IPR001471	AP2/ERF domain
SMART	SM00380	8.4E-37	96	160	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.774	96	154	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.9E-30	96	155	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.53E-22	96	156	IPR016177	DNA-binding domain
PRINTS	PR00367	4.1E-10	97	108	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.1E-10	120	136	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MEPSLFHQYL KPEIISFDSL QPFSWELEDD GFLFHPPSSL PFDCNDSEQM ILFDVLSKAT 60 NRDQSSESNS TSSRVKEEEV SSSKEEEVST GKKEKSYRGV RKRPWGKYAA EIRDSTRNGI 120 RVWLGTFDSA EAAALAYDQA AFSMRGSMAI LNFPVEMVRE SMQEIKYRCE DGCSPVVALK 180 RRHSMRRNSS STESKGKEVN NNRTQHVVVL EDLGAEYLEE LLSSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-28	89	156	7	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269\|PubMed:23057995, ECO:0000269\|PubMed:28733419}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29584.m000234

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269\|PubMed:28733419}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015582817.1	1e-131	ethylene-responsive transcription factor 1B
Swissprot	A0A3Q7I5Y9	4e-71	ERFC3_SOLLC; Ethylene-response factor C3
TrEMBL	B9T293	1e-166	B9T293_RICCO; Ethylene-responsive transcription factor 1B, putative (Fragment)
STRING	XP_002532362.1	1e-167	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF311	33	199

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23240.1	4e-56	ethylene response factor 1

Link Out ? help Back to Top
Phytozome	29584.m000234

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Pirrello J, et al. Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene. BMC Plant Biol., 2012. 12: p. 190 [PMID:23057995] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419]