PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27810.m000651
Common NameRCOM_0090910
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 344aa    MW: 39348.6 Da    PI: 6.2663
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27810.m000651genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.8e-05267289123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C +Cgk F  + + ++H +++
  27810.m000651 267 FMCRKCGKAFAVRGDWRTHEKNC 289
                    89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.52E-5179205No hitNo description
SMARTSM003550.58183205IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.0E-6183202IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.64183210IPR007087Zinc finger, C2H2
PROSITE patternPS000280185205IPR007087Zinc finger, C2H2
SuperFamilySSF576671.59E-6249287No hitNo description
Gene3DG3DSA:3.30.160.609.1E-6254287IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549267287IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808267287IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MADPYSNFFT GFFKFNNNPF HHHYPSSNPI PPQFSYNTYN NSNFYTTNPF TINDQDQYNP  60
FLSYQNRPPS PPLREALPLL SLSPARNEKD HQEQDQDQDQ EDEDQEQEQE QDDDTVTVAL  120
HIGLPSPSAA EMASVLSSSS DVITEKDIGD GDDSTTEYPI NRLNKGQYWI PTPSQILIGP  180
TQFSCPVCCK TFNRYNNMQM HMWGHGSQYR KGPESLRGTQ PTGMLRLPCY CCAPGCRNNI  240
DHPRAKPLKD FRTLQTHYKR KHGIKPFMCR KCGKAFAVRG DWRTHEKNCG KLWYCICGSD  300
FKHKRSLKDH IKAFGNGHAA YGIDGFEEED EPASEVEQDN VSVQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap27810.m000651
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622314.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-151ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLB9SL660.0B9SL66_RICCO; TRANSPARENT TESTA 1 protein, putative
STRINGXP_002526735.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-144C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]