PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27506.m000051
Common NameLOC8277646, RCOM_0025300
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family CO-like
Protein Properties Length: 388aa    MW: 42193.2 Da    PI: 6.7159
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27506.m000051genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.84.4e-081960338
       zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                   +r+C+ ++   +  fC+ ++ +lC +C  ++H        H+
  27506.m000051 19 ARRCDSCKTAAAAVFCRADSAFLCLNCDAKIHAAnklvsrHE 60
                   689******99*********************6656666666 PP
2zf-B_box26.71.2e-0862107342
       zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                     ++C+ +e+ ++   C+ +   lC +C   +H+       H++vp+
  27506.m000051  62 VWMCEVCEQAPAAVTCKADAAALCVTCDADIHSAnplarrHERVPV 107
                    689*****************************66899999999986 PP
3CCT69.67.9e-24315358144
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                    Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  27506.m000051 315 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 358
                    9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.4E-131764IPR000315B-box-type zinc finger
PROSITE profilePS5011910.5091764IPR000315B-box-type zinc finger
CDDcd000216.33E-92064No hitNo description
PfamPF006435.3E-62061IPR000315B-box-type zinc finger
PROSITE profilePS5011910.8560107IPR000315B-box-type zinc finger
PfamPF006431.0E-662107IPR000315B-box-type zinc finger
CDDcd000215.11E-963107No hitNo description
SMARTSM003363.1E-1065107IPR000315B-box-type zinc finger
PfamPF062036.1E-18315357IPR010402CCT domain
PROSITE profilePS5101716.787315357IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MGIEMESLKS LTGGWTVAAR RCDSCKTAAA AVFCRADSAF LCLNCDAKIH AANKLVSRHE  60
RVWMCEVCEQ APAAVTCKAD AAALCVTCDA DIHSANPLAR RHERVPVEPF FDSAGSIVKS  120
SPFNFLVPTD HNGAGSAAFN HQQHEDDDVE GVSWLLPNPS STMINSKLGG IENHEMKSGH  180
GGGGGSGDLF FTEMDPFLDL EFHQNNNHSS AANDSVVPVQ ITKPAAASSI PVMNNDICYD  240
IDFCRTKLSS FNYPTQSLSQ SVSSSSLDVG VVPDGSSTSD ISYPFGRNMN TCTDPSGPIS  300
GNSTNQAAQM CGINREARVL RYREKRKNRK FEKTIRYASR KAYAETRPRI KGRFAKRTEI  360
DTDMDRLYNS PSSVSYLGDA QYGVVPTF
Cis-element ? help Back to Top
SourceLink
PlantRegMap27506.m000051
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002533687.10.0zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH81e-124COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLB9T6180.0B9T618_RICCO; Zinc finger protein, putative
STRINGXP_002533687.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-116CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]