PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 115439 | ||||||||
Common Name | WOXII | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | WOX | ||||||||
Protein Properties | Length: 87aa MW: 10221.7 Da PI: 9.6025 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 49.9 | 5.5e-16 | 1 | 61 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ q+ +Le Fe+ + p ++++ +++ l ++e +V++WFqNrRa+ k+ 115439 1 RPRWKPTPVQISILEYIFENsDLLPGDKDITIITDGLrlygPVEEVNVFYWFQNRRARAKR 61 79*****************98999*************888889****************97 PP | |||||||
2 | Wus_type_Homeobox | 79.3 | 5.3e-26 | 2 | 61 | 4 | 63 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerq 63 +RW Ptp Qi iLe ++++ P + i+ it L+ yG +e+ NVfyWFQNr+aR ++ 115439 2 PRWKPTPVQISILEYIFENSDLLPGDKDITIITDGLRLYGPVEEVNVFYWFQNRRARAKR 61 7********************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 7.8E-4 | 1 | 66 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.4E-13 | 1 | 61 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.82E-6 | 1 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.6E-9 | 1 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.807 | 1 | 62 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.99E-12 | 1 | 68 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
RPRWKPTPVQ ISILEYIFEN SDLLPGDKDI TIITDGLRLY GPVEEVNVFY WFQNRRARAK 60 RTANQEHHPK VRNFDPAKTL EPFEKL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FR838950 | 1e-146 | Selaginella moellendorffii WOXII gene for putative transcription factor |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002981885.2 | 3e-59 | putative WUSCHEL-related homeobox 10 | ||||
Swissprot | O81788 | 2e-14 | WOX13_ARATH; WUSCHEL-related homeobox 13 | ||||
TrEMBL | H8WFF3 | 8e-58 | H8WFF3_SELML; Putative transcription factor | ||||
STRING | EFJ16978 | 7e-58 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1873 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 6e-17 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | 115439 |
Publications ? help Back to Top | |||
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