PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantTFDB

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

105904

Common Name

MICPUN_105904

Organism

Micromonas sp. RCC299

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

Protein Properties

Length: 300aa MW: 31980.5 Da PI: 7.8997

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
105904	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	102.9	2.7e-32	12	104	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y+i++++e+++++sws ng++f v++ ++f++k+Lp+ F h nf+SFvRQLn YgF+kv++++ w F+++ F +g +++l+ki 105904 12 FLRKVYSIVSNPETDDIVSWSGNGKQFTVHQLNDFSTKILPSNFNHPNFSSFVRQLNSYGFRKVEHSS---------WTFANPDFYEGGEDNLKKIS 99 9**************************************************************998.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 rk+s+ 105904 100 RKTSQ 104 987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.1E-38	8	101	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	2.2E-30	10	101	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	5.03E-27	10	101	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	8.4E-27	12	101	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.2E-16	12	35	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.2E-16	50	62	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.2E-16	63	75	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MGVRGVEIAA PFLRKVYSIV SNPETDDIVS WSGNGKQFTV HQLNDFSTKI LPSNFNHPNF 60 SSFVRQLNSY GFRKVEHSSW TFANPDFYEG GEDNLKKISR KTSQKKQEEI RRGAWDDESA 120 FGVGGDPRRT ALDLHMRQEL QICRLEVAHL VHRIGTVEHI QEQLLALLIN PQNSAQRAAS 180 SGMQQQGGGA NAGQIGDVLE SLYKQISESR HSGDATNLGG WGAYGVNAAV ARHPGLAGAA 240 AMGGLGPQAR HDLGGGVNGG LQFGYDALSG LGVTGAGTGG VSNGAGRSQL EALYHQATK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5w_B	5e-20	9	101	1	104	Putative transcription factor
5d5x_B	5e-20	9	101	1	104	Putative transcription factor
5d5x_E	5e-20	9	101	1	104	Putative transcription factor
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001575	0.0	CP001575.1 Micromonas sp. RCC299 chromosome 8, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002508079.1	0.0	heat shock transcription factor
TrEMBL	C1FFA6	0.0	C1FFA6_MICCC; Heat shock transcription factor
STRING	XP_002508079.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP522	15	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	1e-28	heat shock transcription factor A2

Link Out ? help Back to Top
Phytozome	105904
Entrez Gene	8245429

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]