PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 0200010675
Common NameOT_ostta02g04300
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family Nin-like
Protein Properties Length: 520aa    MW: 56380.2 Da    PI: 9.1186
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
0200010675genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK81.77.2e-26112161352
      RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                 +ei++e+ls++F+lp ++A+++Lgv+lTvLKr+CR+yGIkRWP+Rk+ksl
  0200010675 112 SEITQEELSSCFHLPSEAACRKLGVGLTVLKRQCRKYGIKRWPFRKMKSL 161
                 78**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.85997181IPR003035RWP-RK domain
PfamPF020421.7E-19114161IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MERARGAEEA TREATTPGDD GDDDDAYELG ERMDDVSESD GYDYDDFEGG AEALMSVKDE  60
LAAARTGSKT SKGAKAKAAG EPNGSLKGDA ESRDKRNQSR ENRRVRQFRS ASEITQEELS  120
SCFHLPSEAA CRKLGVGLTV LKRQCRKYGI KRWPFRKMKS LDRLITNVQA GISPGDQNRL  180
LVKSVEELED QKRKMEECAM LDLDDTTKKL QQAYSKANHK ARRNRGEATR IRVHAAANAV  240
RELEARRRGG YGDEPNGAGE TLLELAHKIH DITVPVKAAT EAPVLPQVLT GFPATAPPAM  300
RGETTPVKRD DATLKPLLSN TPTPPAGNGV KVEMESVEGK KASTSSNPKP MKGDLVAANY  360
VGPPEKVLTA VRGAWSPARP ARRTDDPSDT EAFLSPREAV RRGRPSVVAS VRPSVGIASS  420
ETAKANANGR TKSAVTEDHP AFGLAPVVKG ARSGAQSRLS GIERAELEHM FRDRLTKVRD  480
SMCEAFQIDP TECEVHFSPK LQATSLATAV EKLATRNSR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022840834.10.0RWP-RK domain
TrEMBLA0A090ME750.0A0A090ME75_OSTTA; RWP-RK domain
STRINGA0A090ME750.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP841650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.13e-24RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]