PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for OGEM2229
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Subtree rooted at node 139: /--------------- Thecc1EG015336t1 [Theobroma cacao] (2) | | /----- Gorai.008G271200.1 [Gossypium raimondii] (9) /-100-+ /-100+ | | | \----- Gh_D12G2688 [Gossypium hirsutum] (40) | \-100+ | | /----- Gh_A12G2705 [Gossypium hirsutum] (59) | \-100+ /-100+ \----- Cotton_A_17750_BGI-A2_v1.0 [Gossypium arboreum] (67) | | | | /----- Gorai.006G200400.1 [Gossypium raimondii] (25) | | /-89-+ | | | \----- Gh_D09G1737 [Gossypium hirsutum] (70) | \----100---+ | | /----- Cotton_A_08081_BGI-A2_v1.0 [Gossypium arboreum] (55) /-100+ \-100+ | | \----- Gh_A09G1643 [Gossypium hirsutum] (64) | | | | /----- orange1.1g047455m [Citrus sinensis] (29) | | /-100+ | | | \----- Ciclev10005220m [Citrus clementina] (52) /-100+ \-------97------+ | | | /----- Eucgr.A02669.1.p [Eucalyptus grandis] (31) | | \-100+ | | \----- Eucgr.K00321.1.p [Eucalyptus grandis] (43) | | /-97-+ \------------------------------- evm.model.supercontig_3.43 [Carica papaya] (66) | | | | /----- XP_010539148.1 [Tarenaya hassleriana] (42) | | /-83-+ | | | \----- XP_010521378.1 [Tarenaya hassleriana] (62) | \-----------100-----------+ | \---------- XP_010555714.1 [Tarenaya hassleriana] (54) | | /------------------------------- KFK26951.1 [Arabis alpina] (3) | | | | /----- Cagra.0084s0074.1.p [Capsella grandiflora] (12) | | /---------100--------+ | /-79-+ | \----- Carubv10026682m [Capsella rubella] (33) | | | | | | | | /--------------------- Bostr.26833s0952.1.p [Boechera stricta] (13) | | \-100+ | | | | | /----- Csa18g024300.1 [Camelina sativa] (49) | | | | /-51-+ | | \-100+ | \----- Csa02g049610.1 [Camelina sativa] (57) /-100+ | | /-100+ | | | | | \---------- Csa11g085120.1 [Camelina sativa] (58) | | | \--99-+ | | | | /----- AT5G53290.1 [Arabidopsis thaliana] (73) | | | \---100---+ | | | \----- 918406 [Arabidopsis lyrata] (75) | | | | | | /----- GSBRNA2T00013903001 [Brassica napus] (4) | | | /-97-+ | | | | \----- XP_013627786.1 [Brassica oleracea] (10) | | | /-100+ | | | | | /----- XP_009132486.1 [Brassica rapa] (16) | | | | \-97-+ | | | /-100-+ \----- GSBRNA2T00086680001 [Brassica napus] (24) | | | | | | | | | | /----- RrC10281_p1 [Raphanus raphanistrum] (34) | | | | \---100---+ | | | | \----- Rsa1.0_00828.1_g00008.1 [Raphanus sativus] (53) | | | | | \-100+------51------+ /----- GSBRNA2T00102298001 [Brassica napus] (5) | | | /-100+ | | | | \----- XP_013616560.1 [Brassica oleracea] (23) | | | /-100+ | | | | | /----- XP_009127181.1 [Brassica rapa] (51) | | | | \-100+ | | \-100-+ \----- GSBRNA2T00092523001 [Brassica napus] (65) | | | | | | /----- RrC2084_p1 [Raphanus raphanistrum] (32) | | \---100---+ | | \----- Rsa1.0_01085.1_g00009.1 [Raphanus sativus] (46) | | /-100-+ |------------------------------------ Thhalv10013898m [Eutrema salsugineum] (6) | | | | | |------------------------------------ Tp6g15440 [Thellungiella parvula] (14) | | | | | | /----- XP_013609661.1 [Brassica oleracea] (17) | | | /-100+ | | | | \----- GSBRNA2T00034033001 [Brassica napus] (20) | | | /-99-+ | | | | \---------- XP_009119873.1 [Brassica rapa] (45) | | | /-100-+ | | | | \--------------- Rsa1.0_15505.1_g00001.1 [Raphanus sativus] (21) | | |------63------+ | | | \--------------------- 676726726 [Sisymbrium irio] (61) | | | | | \------------------------------------ AA77G00031 [Aethionema arabicum] (28) | | | | /----- Csa11g016030.1 [Camelina sativa] (15) | | /-63-+ | | | \----- Csa10g014840.1 [Camelina sativa] (30) | | /-100+ | | | \---------- Csa12g022720.1 [Camelina sativa] (39) | | /-100-+ | | | | /----- Cagra.1225s0103.1.p [Capsella grandiflora] (50) | | | \---100---+ | | /-100+ \----- Carubv10005229m [Capsella rubella] (63) | | | | | | | \--------------------- Bostr.7867s0626.1.p [Boechera stricta] (47) | | /-100+ | | | | /----- 913731 [Arabidopsis lyrata] (60) | | | \---------100--------+ /-84-+ \------100-----+ \----- AT4G27950.1 [Arabidopsis thaliana] (69) | | | | | \------------------------------- KFK29317.1 [Arabis alpina] (36) | | | | /----- RrC7896_p1 [Raphanus raphanistrum] (7) | | /---100---+ | | | \----- Rsa1.0_00188.1_g00012.1 [Raphanus sativus] (27) | | | | |-----------------100----------------+ /----- XP_009109117.1 [Brassica rapa] (11) | | | /-100+ | | | | \----- GSBRNA2T00078845001 [Brassica napus] (68) | | \-100+ | | | /----- GSBRNA2T00104541001 [Brassica napus] (38) | | \-100+ | | \----- XP_013602562.1 [Brassica oleracea] (44) | | /-100+ |---------------------------------------------------- Thhalv10025693m [Eutrema salsugineum] (18) | | | | | | /----- XP_013596390.1 [Brassica oleracea] (19) | | | /-100+ | | | | \----- GSBRNA2T00154688001 [Brassica napus] (22) | | | /-100+ | | | | | /----- XP_009108674.1 [Brassica rapa] (48) | | | | \-100+ | | |-----------------100----------------+ \----- GSBRNA2T00044316001 [Brassica napus] (72) | | | | --100+ | | | /----- Rsa1.0_00593.1_g00010.1 [Raphanus sativus] (71) | | | \---100---+ | | | \----- RrC2_p18 [Raphanus raphanistrum] (76) | | | | | \---------------------------------------------------- Tp7g25910 [Thellungiella parvula] (56) | | | \--------------------------------------------------------- 676753546 [Sisymbrium irio] (35) | | /----- RrC336_p6 [Raphanus raphanistrum] (8) \---------------------------100--------------------------+ \----- Rsa1.0_01460.1_g00003.1 [Raphanus sativus] (41) Root part of tree: /------------------------------------------------------------------- XP_013588980.1 [Brassica oleracea] (1) | |------------------------------------------------------------------- GSBRNA2T00016551001 [Brassica napus] (37) + | /--------------------------------------------- (139) | | \---------100---------+ /---------------------- GSBRNA2T00011783001 [Brassica napus] (26) \----------100---------+ \---------------------- XP_009144087.1 [Brassica rapa] (74) |