 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | PNH11685.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena
|
||||||||
| Family | MYB_related | ||||||||
| Protein Properties | Length: 2426aa MW: 241561 Da PI: 8.3605 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 44.3 | 4e-14 | 47 | 91 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
r rWT eE+ ++v+a +++G W++I +++ ++t+ q++s+ qky
PNH11685.1 47 RERWTDEEHGRFVEALRLHGRA-WRKIEEYVA-TKTAVQIRSHAQKY 91
78******************88.*********.*************9 PP
| |||||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 2426 aa Download sequence |
MERKFGGFSE PPERAASPQP LQQPGAPDGG DEAPGKARKQ YTKTKTRERW TDEEHGRFVE 60 ALRLHGRAWR KIEEYVATKT AVQIRSHAQK YFNKADAIEV PPPRPKRKSA APPALAAIQR 120 AAHAERGGSS DPGYGADDVA GSDGGVAHRH VISADDSPLA QLQLQQQPQL QQLALVAQSY 180 LPHTLLPYRG QAAAAAPLAL MAGKEPLAGT AAPVLPAAGA AAPAVTRVRD EQPTPQFQQQ 240 QQAAAAVARP PGPPPPPYPL HGPSLPAPPQ PPPPLASSLA ESIAHNIALN MAQWAQAQVQ 300 APDPHSGALL AVGADRATVE AVAAAAAAAA AAAATAVISA AGEAIQQRLQ QKAAAGLLPF 360 LVHPLGQLRP PPLPAAAAAA AAAAASTATS ERGTPPWAVP PHQAPVHLLV ASGCGRTDLG 420 QQQQQQQQQR QQQQGPQQPR QQQLVPFSCR AASLSLERGG APSGAAGSEP QTREGTPPAL 480 RPSVGARTGA AAGVSVGGVQ LQVQPPTQLQ AWEGAAAALP PALAKPAPGL LRSHSLPPAW 540 GEQQQEQLLL QLGLQPPQRH HQPTHGGPLQ LLGPRMCIAE PAHQEKSGPQ PQPQRPRSHS 600 PSQAQQADCK ATAELDGGPD AHVVRQSTVV AAAPSVVRQQ AELPCGSLVK EEVVQEQQQG 660 AALGGRHRRP RPAEVAARDG GDHERRGRSA ADSAVGPPAC AHAVASLGAS GCSAGVASPA 720 AAGPAAAAAV PLPAPSAVPV TAAPGDDGAA LCRSLLHQPT SARATQPGAL GPGPPSVHRQ 780 PVPGAPSQAP PLRHHHHHHH HHHHKPDLPH CSRLHRLRRA PLSPLAPEDS ATQPAGVGGW 840 LDDCGTAGCG DGAYQLGQLQ YLPQQSGGPG LSGTNTAGSA FGSLREVLQG PERCVPLLAP 900 CAAQQDAAAA QLARYQLSAE RQHAAQEEQA AGMRRAAEGE ADGGDGGSGG SGPDYLLDRG 960 DCSALAGASP GQQLMSGAVG PSDYLLLQQR QQHRTHAHAR PQEPQHPLLQ QQQLRQPHGP 1020 LKLHEAGARR RPLRQGSNSP LGWPLSQAAA AGAAAAAAGG GGSPLAAAPR KDGTAGGSRL 1080 GSGAGSGAGS GAGGQSSARA LAPAPSGAGG GGARRETPPI GVSAGTRQGP GGQGGATGAG 1140 TGAATATATA TGGARAKSSG TGGDRLDSGT GSGSGGGCGA ERGGSSSRDA LPGASGIGRH 1200 VPAYVATQQR AQLEQLEQLE QCERRLAPLE AGPAVAGVGG AAARVRTADG NEAPGARRQA 1260 QGQVQLAAGP RLQPPLAELA LPQQPPQQQQ TPFRSADTLS LLQHLLAQQQ PQQQQGTLAH 1320 QPQQQQQQEQ PPDGLLSTLA SLSAGAQAVA SLLTMHQRQE QQQQQQQRQP ALSGLLVRDP 1380 LRHLVLSRTN SGVSELLAAA ALAARSGSAS FGGGAAAAPA SVAAAAAAIA AGTAASGGAA 1440 ALVMSGMGSA ADGGSGACLG GLMAPGGALA ALMPYLTGER QIESEHLARL EETAQALQYA 1500 SALAGPLAAA LRQPGLLQQQ VLGTAAVAQQ PQPQLQRQEP QQRGKQSDDC ARQGNGAAPG 1560 CTATAPQPGG TTPARSSEPP PSASQVRHWH QAAAAYGLQP LMRQQQQQQS QPRPGASRGA 1620 ELEAAVLPLT RPAGEGEAPT GTQPGYAPHP LLQQHTRSQV AHAQVRGLQG LHGPAPPSFA 1680 ARTAPSDPRL SGGGAGPRRS CGDTAAESVR VSGDSHLHDR HGGGGGGGSV KRTLSNMYGG 1740 HAAAAAAAAA GPQRSGRHKA PRRRHRGHHQ SPSRSVGSGA SSSGFHCGGG ERSGGEEAHC 1800 CPREYDNARD EAGGGGGPLG DGDAATSGGG QGGLKGGGGR GAGSVGRAGG GGGFAVPQPP 1860 QQQQQQQQQQ QQSPRKENES ADKLHSSGGG AGGGSGGAHA RPPRPPKDGS PCSGGGSGSQ 1920 TFDGSLNASD EGSNEPGNAP AGGPMGQPSL GASEGPEGQG GNMQGAAGAG AGGGARSFSV 1980 AQPEGKAGLG LGPRGPGQGQ GGAGAATGGF KRARPEAQAA VDATRAAEGP EGGGAASGDG 2040 ASGGSPPALG AAGGGRLVPP NKVARTGGGG GVAGPHASAI AAGGGQDEPG HPMREAAAGS 2100 AGGQHCGDGG ASGGADECGG RFAAAEPQRR PASLPSNLAD VQEQGSSKAG GGGGGGQDGG 2160 AGDDSGIGPR SRVRSNDSAG GAHGGRSAEG GRSGGEGGEE RGGPGHGGQG SNGQGSNGDG 2220 SNGNGASTNL PGGGRRGGYC RTPSGLRRSS GGGPHVQSGS AGSGGGGSGG GSGGGSGGEG 2280 PLAYDDDRAH HHHHHHHHHH HHHQQQESAR ALTPPDHAAP IPQHHLSGPL GSEGGGALAQ 2340 QGSMGYAAVP EERQRGPSVV GPGPAFQARS AEGFPGEAEE RDRYATEEWA LAMVTPPHQG 2400 GQGEDFGMGR EGGGGPWDGI DAMEYE |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 1757 | 1766 | RHKAPRRRHR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G46830.1 | 9e-25 | MYB_related family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|