- Staiger D,Heintzen C
The circadian system of Arabidopsis thaliana: forward and reverse genetic approaches.
Chronobiol. Int., 1999. 16(1): p. 1-16
[PMID:10023572] - Green RM,Tobin EM
Loss of the circadian clock-associated protein 1 in Arabidopsis results in altered clock-regulated gene expression.
Proc. Natl. Acad. Sci. U.S.A., 1999. 96(7): p. 4176-9
[PMID:10097183] - Fowler S, et al.
GIGANTEA: a circadian clock-controlled gene that regulates photoperiodic flowering in Arabidopsis and encodes a protein with several possible membrane-spanning domains.
EMBO J., 1999. 18(17): p. 4679-88
[PMID:10469647] - Park DH, et al.
Control of circadian rhythms and photoperiodic flowering by the Arabidopsis GIGANTEA gene.
Science, 1999. 285(5433): p. 1579-82
[PMID:10477524] - Somers DE
The physiology and molecular bases of the plant circadian clock.
Plant Physiol., 1999. 121(1): p. 9-20
[PMID:10482655] - Sugano S,Andronis C,Ong MS,Green RM,Tobin EM
The protein kinase CK2 is involved in regulation of circadian rhythms in Arabidopsis.
Proc. Natl. Acad. Sci. U.S.A., 1999. 96(22): p. 12362-6
[PMID:10535927] - Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Schaffer R, et al.
Microarray analysis of diurnal and circadian-regulated genes in Arabidopsis.
Plant Cell, 2001. 13(1): p. 113-23
[PMID:11158533] - Xu Y,Johnson CH
A clock- and light-regulated gene that links the circadian oscillator to LHCB gene expression.
Plant Cell, 2001. 13(6): p. 1411-25
[PMID:11402169] - Alabadí D, et al.
Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock.
Science, 2001. 293(5531): p. 880-3
[PMID:11486091] - Makino S,Matsushika A,Kojima M,Yamashino T,Mizuno T
The APRR1/TOC1 quintet implicated in circadian rhythms of Arabidopsis thaliana: I. Characterization with APRR1-overexpressing plants.
Plant Cell Physiol., 2002. 43(1): p. 58-69
[PMID:11828023] - Alabad
Critical role for CCA1 and LHY in maintaining circadian rhythmicity in Arabidopsis.
Curr. Biol., 2002. 12(9): p. 757-61
[PMID:12007421] - Mizoguchi T, et al.
LHY and CCA1 are partially redundant genes required to maintain circadian rhythms in Arabidopsis.
Dev. Cell, 2002. 2(5): p. 629-41
[PMID:12015970] - Yoshida I,Yamagata H,Hirasawa E
Signal transduction controlling the blue- and red-light mediated gene expression of S-adenosylmethionine decarboxylase in Pharbitis nil.
J. Exp. Bot., 2002. 53(373): p. 1525-9
[PMID:12021301] - Green RM,Tingay S,Wang ZY,Tobin EM
Circadian rhythms confer a higher level of fitness to Arabidopsis plants.
Plant Physiol., 2002. 129(2): p. 576-84
[PMID:12068102] - Devlin PF
Signs of the time: environmental input to the circadian clock.
J. Exp. Bot., 2002. 53(374): p. 1535-50
[PMID:12096092] - Carr
MYB transcription factors in the Arabidopsis circadian clock.
J. Exp. Bot., 2002. 53(374): p. 1551-7
[PMID:12096093] - Kircher S, et al.
Nucleocytoplasmic partitioning of the plant photoreceptors phytochrome A, B, C, D, and E is regulated differentially by light and exhibits a diurnal rhythm.
Plant Cell, 2002. 14(7): p. 1541-55
[PMID:12119373] - Matsushika A,Imamura A,Yamashino T,Mizuno T
Aberrant expression of the light-inducible and circadian-regulated APRR9 gene belonging to the circadian-associated APRR1/TOC1 quintet results in the phenotype of early flowering in Arabidopsis thaliana.
Plant Cell Physiol., 2002. 43(8): p. 833-43
[PMID:12198185] - Doyle MR, et al.
The ELF4 gene controls circadian rhythms and flowering time in Arabidopsis thaliana.
Nature, 2002. 419(6902): p. 74-7
[PMID:12214234] - Michael TP,McClung CR
Phase-specific circadian clock regulatory elements in Arabidopsis.
Plant Physiol., 2002. 130(2): p. 627-38
[PMID:12376630] - Hall A,Kozma-Bogn
Distinct regulation of CAB and PHYB gene expression by similar circadian clocks.
Plant J., 2002. 32(4): p. 529-37
[PMID:12445124] - Sato E,Nakamichi N,Yamashino T,Mizuno T
Aberrant expression of the Arabidopsis circadian-regulated APRR5 gene belonging to the APRR1/TOC1 quintet results in early flowering and hypersensitiveness to light in early photomorphogenesis.
Plant Cell Physiol., 2002. 43(11): p. 1374-85
[PMID:12461138] - M
Dual role of TOC1 in the control of circadian and photomorphogenic responses in Arabidopsis.
Plant Cell, 2003. 15(1): p. 223-36
[PMID:12509533] - Staiger D, et al.
The Arabidopsis SRR1 gene mediates phyB signaling and is required for normal circadian clock function.
Genes Dev., 2003. 17(2): p. 256-68
[PMID:12533513] - Kim JY,Song HR,Taylor BL,Carr
Light-regulated translation mediates gated induction of the Arabidopsis clock protein LHY.
EMBO J., 2003. 22(4): p. 935-44
[PMID:12574129] - Nakamichi N,Matsushika A,Yamashino T,Mizuno T
Cell autonomous circadian waves of the APRR1/TOC1 quintet in an established cell line of Arabidopsis thaliana.
Plant Cell Physiol., 2003. 44(3): p. 360-5
[PMID:12668783] - Heim MA, et al.
The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.
Mol. Biol. Evol., 2003. 20(5): p. 735-47
[PMID:12679534] - Tenorio G,Orea A,Romero JM,M
Oscillation of mRNA level and activity of granule-bound starch synthase I in Arabidopsis leaves during the day/night cycle.
Plant Mol. Biol., 2003. 51(6): p. 949-58
[PMID:12777053] - Michael TP,McClung CR
Enhancer trapping reveals widespread circadian clock transcriptional control in Arabidopsis.
Plant Physiol., 2003. 132(2): p. 629-39
[PMID:12805593] - Eriksson ME,Millar AJ
The circadian clock. A plant's best friend in a spinning world.
Plant Physiol., 2003. 132(2): p. 732-8
[PMID:12805602] - Eriksson ME,Hanano S,Southern MM,Hall A,Millar AJ
Response regulator homologues have complementary, light-dependent functions in the Arabidopsis circadian clock.
Planta, 2003. 218(1): p. 159-62
[PMID:12955513] - Kuno N, et al.
The novel MYB protein EARLY-PHYTOCHROME-RESPONSIVE1 is a component of a slave circadian oscillator in Arabidopsis.
Plant Cell, 2003. 15(10): p. 2476-88
[PMID:14523250] - Hall A, et al.
The TIME FOR COFFEE gene maintains the amplitude and timing of Arabidopsis circadian clocks.
Plant Cell, 2003. 15(11): p. 2719-29
[PMID:14555691] - Maxwell BB,Andersson CR,Poole DS,Kay SA,Chory J
HY5, Circadian Clock-Associated 1, and a cis-element, DET1 dark response element, mediate DET1 regulation of chlorophyll a/b-binding protein 2 expression.
Plant Physiol., 2003. 133(4): p. 1565-77
[PMID:14563928] - Kaczorowski KA,Quail PH
Arabidopsis PSEUDO-RESPONSE REGULATOR7 is a signaling intermediate in phytochrome-regulated seedling deetiolation and phasing of the circadian clock.
Plant Cell, 2003. 15(11): p. 2654-65
[PMID:14563930] - Yamada K, et al.
Empirical analysis of transcriptional activity in the Arabidopsis genome.
Science, 2003. 302(5646): p. 842-6
[PMID:14593172] - Ito S, et al.
Characterization of the APRR9 pseudo-response regulator belonging to the APRR1/TOC1 quintet in Arabidopsis thaliana.
Plant Cell Physiol., 2003. 44(11): p. 1237-45
[PMID:14634162] - Oda A,Fujiwara S,Kamada H,Coupland G,Mizoguchi T
Antisense suppression of the Arabidopsis PIF3 gene does not affect circadian rhythms but causes early flowering and increases FT expression.
FEBS Lett., 2004. 557(1-3): p. 259-64
[PMID:14741378] - Nakamichi N, et al.
Characterization of plant circadian rhythms by employing Arabidopsis cultured cells with bioluminescence reporters.
Plant Cell Physiol., 2004. 45(1): p. 57-67
[PMID:14749486] - Daniel X,Sugano S,Tobin EM
CK2 phosphorylation of CCA1 is necessary for its circadian oscillator function in Arabidopsis.
Proc. Natl. Acad. Sci. U.S.A., 2004. 101(9): p. 3292-7
[PMID:14978263] - Searle I,Coupland G
Induction of flowering by seasonal changes in photoperiod.
EMBO J., 2004. 23(6): p. 1217-22
[PMID:15014450] - Yasuhara M, et al.
Identification of ASK and clock-associated proteins as molecular partners of LKP2 (LOV kelch protein 2) in Arabidopsis.
J. Exp. Bot., 2004. 55(405): p. 2015-27
[PMID:15310821] - Thain SC, et al.
Circadian rhythms of ethylene emission in Arabidopsis.
Plant Physiol., 2004. 136(3): p. 3751-61
[PMID:15516515] - Farré EM,Harmer SL,Harmon FG,Yanovsky MJ,Kay SA
Overlapping and distinct roles of PRR7 and PRR9 in the Arabidopsis circadian clock.
Curr. Biol., 2005. 15(1): p. 47-54
[PMID:15649364] - Nakamichi N, et al.
The Arabidopsis pseudo-response regulators, PRR5 and PRR7, coordinately play essential roles for circadian clock function.
Plant Cell Physiol., 2005. 46(4): p. 609-19
[PMID:15695441] - Fujimori T,Sato E,Yamashino T,Mizuno T
PRR5 (PSEUDO-RESPONSE REGULATOR 5) plays antagonistic roles to CCA1 (CIRCADIAN CLOCK-ASSOCIATED 1) in Arabidopsis thaliana.
Biosci. Biotechnol. Biochem., 2005. 69(2): p. 426-30
[PMID:15725674] - Boxall SF, et al.
Conservation and divergence of circadian clock operation in a stress-inducible Crassulacean acid metabolism species reveals clock compensation against stress.
Plant Physiol., 2005. 137(3): p. 969-82
[PMID:15734916] - Chang WC,Li CW,Chen BS
Quantitative inference of dynamic regulatory pathways via microarray data.
BMC Bioinformatics, 2005. 6: p. 44
[PMID:15748298] - Nakamichi N,Kita M,Ito S,Yamashino T,Mizuno T
PSEUDO-RESPONSE REGULATORS, PRR9, PRR7 and PRR5, together play essential roles close to the circadian clock of Arabidopsis thaliana.
Plant Cell Physiol., 2005. 46(5): p. 686-98
[PMID:15767265] - Harmer SL,Kay SA
Positive and negative factors confer phase-specific circadian regulation of transcription in Arabidopsis.
Plant Cell, 2005. 17(7): p. 1926-40
[PMID:15923346] - Hazen SP, et al.
LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms.
Proc. Natl. Acad. Sci. U.S.A., 2005. 102(29): p. 10387-92
[PMID:16006522] - Mizoguchi T, et al.
Distinct roles of GIGANTEA in promoting flowering and regulating circadian rhythms in Arabidopsis.
Plant Cell, 2005. 17(8): p. 2255-70
[PMID:16006578] - Lu Y,Gehan JP,Sharkey TD
Daylength and circadian effects on starch degradation and maltose metabolism.
Plant Physiol., 2005. 138(4): p. 2280-91
[PMID:16055686] - Onai K,Ishiura M
PHYTOCLOCK 1 encoding a novel GARP protein essential for the Arabidopsis circadian clock.
Genes Cells, 2005. 10(10): p. 963-72
[PMID:16164597] - Kikis EA,Khanna R,Quail PH
ELF4 is a phytochrome-regulated component of a negative-feedback loop involving the central oscillator components CCA1 and LHY.
Plant J., 2005. 44(2): p. 300-13
[PMID:16212608] - Salom
Arabidopsis response regulators ARR3 and ARR4 play cytokinin-independent roles in the control of circadian period.
Plant Cell, 2006. 18(1): p. 55-69
[PMID:16326927] - Yanhui C, et al.
The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family.
Plant Mol. Biol., 2006. 60(1): p. 107-24
[PMID:16463103] - Miwa K,Serikawa M,Suzuki S,Kondo T,Oyama T
Conserved expression profiles of circadian clock-related genes in two Lemna species showing long-day and short-day photoperiodic flowering responses.
Plant Cell Physiol., 2006. 47(5): p. 601-12
[PMID:16524874] - McClung CR
Plant circadian rhythms.
Plant Cell, 2006. 18(4): p. 792-803
[PMID:16595397] - Gould PD, et al.
The molecular basis of temperature compensation in the Arabidopsis circadian clock.
Plant Cell, 2006. 18(5): p. 1177-87
[PMID:16617099] - Ishikawa M,Kiba T,Chua NH
The Arabidopsis SPA1 gene is required for circadian clock function and photoperiodic flowering.
Plant J., 2006. 46(5): p. 736-46
[PMID:16709190] - Chen M,Ni M
RFI2, a RING-domain zinc finger protein, negatively regulates CONSTANS expression and photoperiodic flowering.
Plant J., 2006. 46(5): p. 823-33
[PMID:16709197] - Locke JC, et al.
Extension of a genetic network model by iterative experimentation and mathematical analysis.
Mol. Syst. Biol., 2005. 1: p. 2005.0013
[PMID:16729048] - Forger D,Drapeau M,Collins B,Blau J
A new model for circadian clock research?
Mol. Syst. Biol., 2005. 1: p. 2005.0014
[PMID:16729049] - Locke JC, et al.
Experimental validation of a predicted feedback loop in the multi-oscillator clock of Arabidopsis thaliana.
Mol. Syst. Biol., 2006. 2: p. 59
[PMID:17102804] - Murakami M,Tago Y,Yamashino T,Mizuno T
Comparative overviews of clock-associated genes of Arabidopsis thaliana and Oryza sativa.
Plant Cell Physiol., 2007. 48(1): p. 110-21
[PMID:17132630] - Dodd AN, et al.
Time of day modulates low-temperature Ca signals in Arabidopsis.
Plant J., 2006. 48(6): p. 962-73
[PMID:17227550] - Yakir E,Hilman D,Harir Y,Green RM
Regulation of output from the plant circadian clock.
FEBS J., 2007. 274(2): p. 335-45
[PMID:17229141] - Lee J, et al.
Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development.
Plant Cell, 2007. 19(3): p. 731-49
[PMID:17337630] - McWatters HG, et al.
ELF4 is required for oscillatory properties of the circadian clock.
Plant Physiol., 2007. 144(1): p. 391-401
[PMID:17384164] - Hecht V, et al.
Pea LATE BLOOMER1 is a GIGANTEA ortholog with roles in photoperiodic flowering, deetiolation, and transcriptional regulation of circadian clock gene homologs.
Plant Physiol., 2007. 144(2): p. 648-61
[PMID:17468223] - Ding Z,Doyle MR,Amasino RM,Davis SJ
A complex genetic interaction between Arabidopsis thaliana TOC1 and CCA1/LHY in driving the circadian clock and in output regulation.
Genetics, 2007. 176(3): p. 1501-10
[PMID:17483414] - Ding Z,Millar AJ,Davis AM,Davis SJ
TIME FOR COFFEE encodes a nuclear regulator in the Arabidopsis thaliana circadian clock.
Plant Cell, 2007. 19(5): p. 1522-36
[PMID:17496120] - Nakamichi N, et al.
Arabidopsis clock-associated pseudo-response regulators PRR9, PRR7 and PRR5 coordinately and positively regulate flowering time through the canonical CONSTANS-dependent photoperiodic pathway.
Plant Cell Physiol., 2007. 48(6): p. 822-32
[PMID:17504813] - Ito S, et al.
Genetic linkages between circadian clock-associated components and phytochrome-dependent red light signal transduction in Arabidopsis thaliana.
Plant Cell Physiol., 2007. 48(7): p. 971-83
[PMID:17519251] - Xu X,Gookin T,Jiang CZ,Reid M
Genes associated with opening and senescence of Mirabilis jalapa flowers.
J. Exp. Bot., 2007. 58(8): p. 2193-201
[PMID:17525082] - Niwa Y, et al.
Genetic linkages of the circadian clock-associated genes, TOC1, CCA1 and LHY, in the photoperiodic control of flowering time in Arabidopsis thaliana.
Plant Cell Physiol., 2007. 48(7): p. 925-37
[PMID:17540692] - Zhang X, et al.
Constitutive expression of CIR1 (RVE2) affects several circadian-regulated processes and seed germination in Arabidopsis.
Plant J., 2007. 51(3): p. 512-25
[PMID:17587236] - Perales M,M
A functional link between rhythmic changes in chromatin structure and the Arabidopsis biological clock.
Plant Cell, 2007. 19(7): p. 2111-23
[PMID:17616736] - Hassidim M, et al.
Mutations in CHLOROPLAST RNA BINDING provide evidence for the involvement of the chloroplast in the regulation of the circadian clock in Arabidopsis.
Plant J., 2007. 51(4): p. 551-62
[PMID:17617174] - Slotte T,Holm K,McIntyre LM,Lagercrantz U,Lascoux M
Differential expression of genes important for adaptation in Capsella bursa-pastoris (Brassicaceae).
Plant Physiol., 2007. 145(1): p. 160-73
[PMID:17631524] - Portol
Altered oscillator function affects clock resonance and is responsible for the reduced day-length sensitivity of CKB4 overexpressing plants.
Plant J., 2007. 51(6): p. 966-77
[PMID:17662034] - Kevei E, et al.
Arabidopsis thaliana circadian clock is regulated by the small GTPase LIP1.
Curr. Biol., 2007. 17(17): p. 1456-64
[PMID:17683937] - Yakir E,Hilman D,Hassidim M,Green RM
CIRCADIAN CLOCK ASSOCIATED1 transcript stability and the entrainment of the circadian clock in Arabidopsis.
Plant Physiol., 2007. 145(3): p. 925-32
[PMID:17873091] - Farr
PRR7 protein levels are regulated by light and the circadian clock in Arabidopsis.
Plant J., 2007. 52(3): p. 548-60
[PMID:17877705] - Kang X,Zhou Y,Sun X,Ni M
HYPERSENSITIVE TO RED AND BLUE 1 and its C-terminal regulatory function control FLOWERING LOCUS T expression.
Plant J., 2007. 52(5): p. 937-48
[PMID:17916114] - Ito S, et al.
Insight into missing genetic links between two evening-expressed pseudo-response regulator genes TOC1 and PRR5 in the circadian clock-controlled circuitry in Arabidopsis thaliana.
Plant Cell Physiol., 2008. 49(2): p. 201-13
[PMID:18178585] - Kant P, et al.
Functional-genomics-based identification of genes that regulate Arabidopsis responses to multiple abiotic stresses.
Plant Cell Environ., 2008. 31(6): p. 697-714
[PMID:18182014] - Abe M,Fujiwara M,Kurotani K,Yokoi S,Shimamoto K
Identification of dynamin as an interactor of rice GIGANTEA by tandem affinity purification (TAP).
Plant Cell Physiol., 2008. 49(3): p. 420-32
[PMID:18296724] - Gutiérrez RA, et al.
Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1.
Proc. Natl. Acad. Sci. U.S.A., 2008. 105(12): p. 4939-44
[PMID:18344319] - Bieniawska Z, et al.
Disruption of the Arabidopsis circadian clock is responsible for extensive variation in the cold-responsive transcriptome.
Plant Physiol., 2008. 147(1): p. 263-79
[PMID:18375597] - Kawamura M,Ito S,Nakamichi N,Yamashino T,Mizuno T
The function of the clock-associated transcriptional regulator CCA1 (CIRCADIAN CLOCK-ASSOCIATED 1) in Arabidopsis thaliana.
Biosci. Biotechnol. Biochem., 2008. 72(5): p. 1307-16
[PMID:18460819] - Salom
Circadian timekeeping during early Arabidopsis development.
Plant Physiol., 2008. 147(3): p. 1110-25
[PMID:18480377] - Knight H,Thomson AJ,McWatters HG
Sensitive to freezing6 integrates cellular and environmental inputs to the plant circadian clock.
Plant Physiol., 2008. 148(1): p. 293-303
[PMID:18614706] - Ascencio-Ib
Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
Plant Physiol., 2008. 148(1): p. 436-54
[PMID:18650403] - Wu JF,Wang Y,Wu SH
Two new clock proteins, LWD1 and LWD2, regulate Arabidopsis photoperiodic flowering.
Plant Physiol., 2008. 148(2): p. 948-59
[PMID:18676661] - Liu H, et al.
Analysis of clock gene homologs using unifoliolates as target organs in soybean (Glycine max).
J. Plant Physiol., 2009. 166(3): p. 278-89
[PMID:18707796] - Fujiwara S, et al.
Circadian clock proteins LHY and CCA1 regulate SVP protein accumulation to control flowering in Arabidopsis.
Plant Cell, 2008. 20(11): p. 2960-71
[PMID:19011118] - Ni Z, et al.
Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids.
Nature, 2009. 457(7227): p. 327-31
[PMID:19029881] - Knowles SM,Lu SX,Tobin EM
Testing time: can ethanol-induced pulses of proposed oscillator components phase shift rhythms in Arabidopsis?
J. Biol. Rhythms, 2008. 23(6): p. 463-71
[PMID:19060255] - James AB, et al.
The circadian clock in Arabidopsis roots is a simplified slave version of the clock in shoots.
Science, 2008. 322(5909): p. 1832-5
[PMID:19095940] - Ito S, et al.
A genetic study of the Arabidopsis circadian clock with reference to the TIMING OF CAB EXPRESSION 1 (TOC1) gene.
Plant Cell Physiol., 2009. 50(2): p. 290-303
[PMID:19098071] - Takata N, et al.
Molecular phylogeny and expression of poplar circadian clock genes, LHY1 and LHY2.
New Phytol., 2009. 181(4): p. 808-19
[PMID:19140936] - Strasser B,Alvarez MJ,Califano A,Cerd
A complementary role for ELF3 and TFL1 in the regulation of flowering time by ambient temperature.
Plant J., 2009. 58(4): p. 629-40
[PMID:19187043] - Lu SX,Knowles SM,Andronis C,Ong MS,Tobin EM
CIRCADIAN CLOCK ASSOCIATED1 and LATE ELONGATED HYPOCOTYL function synergistically in the circadian clock of Arabidopsis.
Plant Physiol., 2009. 150(2): p. 834-43
[PMID:19218364] - Pruneda-Paz JL,Breton G,Para A,Kay SA
A functional genomics approach reveals CHE as a component of the Arabidopsis circadian clock.
Science, 2009. 323(5920): p. 1481-5
[PMID:19286557] - Proels RK,Roitsch T
Extracellular invertase LIN6 of tomato: a pivotal enzyme for integration of metabolic, hormonal, and stress signals is regulated by a diurnal rhythm.
J. Exp. Bot., 2009. 60(6): p. 1555-67
[PMID:19297549] - Yakir E, et al.
Posttranslational regulation of CIRCADIAN CLOCK ASSOCIATED1 in the circadian oscillator of Arabidopsis.
Plant Physiol., 2009. 150(2): p. 844-57
[PMID:19339503] - Fukushima A, et al.
Impact of clock-associated Arabidopsis pseudo-response regulators in metabolic coordination.
Proc. Natl. Acad. Sci. U.S.A., 2009. 106(17): p. 7251-6
[PMID:19359492] - Robertson FC,Webb AA
Revolutionary functional genomics liberates CHE.
Nat. Chem. Biol., 2009. 5(5): p. 276-7
[PMID:19377451] - Stephenson PG,Fankhauser C,Terry MJ
PIF3 is a repressor of chloroplast development.
Proc. Natl. Acad. Sci. U.S.A., 2009. 106(18): p. 7654-9
[PMID:19380736] - Yoshida R, et al.
Possible role of early flowering 3 (ELF3) in clock-dependent floral regulation by short vegetative phase (SVP) in Arabidopsis thaliana.
New Phytol., 2009. 182(4): p. 838-50
[PMID:19383102] - Penfield S,Hall A
A role for multiple circadian clock genes in the response to signals that break seed dormancy in Arabidopsis.
Plant Cell, 2009. 21(6): p. 1722-32
[PMID:19542296] - Okada R, et al.
Functional characterization of CCA1/LHY homolog genes, PpCCA1a and PpCCA1b, in the moss Physcomitrella patens.
Plant J., 2009. 60(3): p. 551-63
[PMID:19624471] - Ishida K,Niwa Y,Yamashino T,Mizuno T
A genome-wide compilation of the two-component systems in Lotus japonicus.
DNA Res., 2009. 16(4): p. 237-47
[PMID:19675111] - Rawat R, et al.
REVEILLE1, a Myb-like transcription factor, integrates the circadian clock and auxin pathways.
Proc. Natl. Acad. Sci. U.S.A., 2009. 106(39): p. 16883-8
[PMID:19805390] - Nakamichi N, et al.
Linkage between circadian clock and tricarboxylic acid cycle in Arabidopsis.
Plant Signal Behav, 2009. 4(7): p. 660-2
[PMID:19820331] - Hotta CT, et al.
Are there multiple circadian clocks in plants?
Plant Signal Behav, 2008. 3(5): p. 342-4
[PMID:19841666] - Ogiso E,Takahashi Y,Sasaki T,Yano M,Izawa T
The role of casein kinase II in flowering time regulation has diversified during evolution.
Plant Physiol., 2010. 152(2): p. 808-20
[PMID:20007447] - Andronis C,Barak S,Knowles SM,Sugano S,Tobin EM
The clock protein CCA1 and the bZIP transcription factor HY5 physically interact to regulate gene expression in Arabidopsis.
Mol Plant, 2008. 1(1): p. 58-67
[PMID:20031914] - Ovadia A,Tabibian-Keissar H,Cohen Y,Kenigsbuch D
The 5'UTR of CCA1 includes an autoregulatory cis element that segregates between light and circadian regulation of CCA1 and LHY.
Plant Mol. Biol., 2010. 72(6): p. 659-71
[PMID:20119844] - Okada R,Satbhai SB,Aoki S
Photoperiod-dependent regulation of cell growth by PpCCA1a and PpCCA1b genes encoding single-myb clock proteins in the moss Physcomitrella patens.
Genes Genet. Syst., 2009. 84(5): p. 379-84
[PMID:20154425] - Nakamichi N, et al.
PSEUDO-RESPONSE REGULATORS 9, 7, and 5 are transcriptional repressors in the Arabidopsis circadian clock.
Plant Cell, 2010. 22(3): p. 594-605
[PMID:20233950] - Andr
Deregulated copper transport affects Arabidopsis development especially in the absence of environmental cycles.
Plant Physiol., 2010. 153(1): p. 170-84
[PMID:20335405] - Baudry A, et al.
F-box proteins FKF1 and LKP2 act in concert with ZEITLUPE to control Arabidopsis clock progression.
Plant Cell, 2010. 22(3): p. 606-22
[PMID:20354196] - Takata N,Saito S,Saito CT,Uemura M
Phylogenetic footprint of the plant clock system in angiosperms: evolutionary processes of pseudo-response regulators.
BMC Evol. Biol., 2010. 10: p. 126
[PMID:20433765] - Graf A,Schlereth A,Stitt M,Smith AM
Circadian control of carbohydrate availability for growth in Arabidopsis plants at night.
Proc. Natl. Acad. Sci. U.S.A., 2010. 107(20): p. 9458-63
[PMID:20439704] - Portol
The functional interplay between protein kinase CK2 and CCA1 transcriptional activity is essential for clock temperature compensation in Arabidopsis.
PLoS Genet., 2010. 6(11): p. e1001201
[PMID:21079791] - Salom
The role of the Arabidopsis morning loop components CCA1, LHY, PRR7, and PRR9 in temperature compensation.
Plant Cell, 2010. 22(11): p. 3650-61
[PMID:21098730] - Lu SX, et al.
The Jumonji C domain-containing protein JMJ30 regulates period length in the Arabidopsis circadian clock.
Plant Physiol., 2011. 155(2): p. 906-15
[PMID:21139085] - Giraud E, et al.
TCP transcription factors link the regulation of genes encoding mitochondrial proteins with the circadian clock in Arabidopsis thaliana.
Plant Cell, 2010. 22(12): p. 3921-34
[PMID:21183706] - Barajas-L
Circadian regulation of chloroplastic f and m thioredoxins through control of the CCA1 transcription factor.
J. Exp. Bot., 2011. 62(6): p. 2039-51
[PMID:21196476] - Morant PE, et al.
A robust two-gene oscillator at the core of Ostreococcus tauri circadian clock.
Chaos, 2010. 20(4): p. 045108
[PMID:21198120] - Farinas B,Mas P
Functional implication of the MYB transcription factor RVE8/LCL5 in the circadian control of histone acetylation.
Plant J., 2011. 66(2): p. 318-29
[PMID:21205033] - Troein C, et al.
Multiple light inputs to a simple clock circuit allow complex biological rhythms.
Plant J., 2011. 66(2): p. 375-85
[PMID:21219507] - Dixon LE, et al.
Temporal repression of core circadian genes is mediated through EARLY FLOWERING 3 in Arabidopsis.
Curr. Biol., 2011. 21(2): p. 120-5
[PMID:21236675] - Wang W, et al.
Timing of plant immune responses by a central circadian regulator.
Nature, 2011. 470(7332): p. 110-4
[PMID:21293378] - Nefissi R, et al.
Double loss-of-function mutation in EARLY FLOWERING 3 and CRYPTOCHROME 2 genes delays flowering under continuous light but accelerates it under long days and short days: an important role for Arabidopsis CRY2 to accelerate flowering time in continuous light.
J. Exp. Bot., 2011. 62(8): p. 2731-44
[PMID:21296763] - Yoo SK,Hong SM,Lee JS,Ahn JH
A genetic screen for leaf movement mutants identifies a potential role for AGAMOUS-LIKE 6 (AGL6) in circadian-clock control.
Mol. Cells, 2011. 31(3): p. 281-7
[PMID:21331777] - Dai S, et al.
BROTHER OF LUX ARRHYTHMO is a component of the Arabidopsis circadian clock.
Plant Cell, 2011. 23(3): p. 961-72
[PMID:21447790] - O'Neill JS,van Ooijen G,Le Bihan T,Millar AJ
Circadian clock parameter measurement: characterization of clock transcription factors using surface plasmon resonance.
J. Biol. Rhythms, 2011. 26(2): p. 91-8
[PMID:21454289] - Dong MA,Farr
Circadian clock-associated 1 and late elongated hypocotyl regulate expression of the C-repeat binding factor (CBF) pathway in Arabidopsis.
Proc. Natl. Acad. Sci. U.S.A., 2011. 108(17): p. 7241-6
[PMID:21471455] - Farinas B,Mas P
Histone acetylation and the circadian clock: a role for the MYB transcription factor RVE8/LCL5.
Plant Signal Behav, 2011. 6(4): p. 541-3
[PMID:21474993] - Rawat R, et al.
REVEILLE8 and PSEUDO-REPONSE REGULATOR5 form a negative feedback loop within the Arabidopsis circadian clock.
PLoS Genet., 2011. 7(3): p. e1001350
[PMID:21483796] - Li G, et al.
Coordinated transcriptional regulation underlying the circadian clock in Arabidopsis.
Nat. Cell Biol., 2011. 13(5): p. 616-22
[PMID:21499259] - Yakir E, et al.
Cell autonomous and cell-type specific circadian rhythms in Arabidopsis.
Plant J., 2011. 68(3): p. 520-31
[PMID:21781194] - Miyata K,Calvi
Suppression of late-flowering and semi-dwarf phenotypes in the Arabidopsis clock mutant lhy-12;cca1-101 by phyB under continuous light.
Plant Signal Behav, 2011. 6(8): p. 1162-71
[PMID:21822060] - McClung CR
The photomorphogenic protein, DE-ETIOLATED 1, is a critical transcriptional corepressor in the central loop of the Arabidopsis circadian clock.
Mol. Cell, 2011. 43(5): p. 693-4
[PMID:21884969] - Lau OS, et al.
Interaction of Arabidopsis DET1 with CCA1 and LHY in mediating transcriptional repression in the plant circadian clock.
Mol. Cell, 2011. 43(5): p. 703-12
[PMID:21884973] - Lu SX, et al.
A role for protein kinase casein kinase2 α-subunits in the Arabidopsis circadian clock.
Plant Physiol., 2011. 157(3): p. 1537-45
[PMID:21900482] - Lu SX, et al.
CCA1 and ELF3 Interact in the control of hypocotyl length and flowering time in Arabidopsis.
Plant Physiol., 2012. 158(2): p. 1079-88
[PMID:22190341] - Sellaro R,Pac
Diurnal dependence of growth responses to shade in Arabidopsis: role of hormone, clock, and light signaling.
Mol Plant, 2012. 5(3): p. 619-28
[PMID:22311777] - Gendron JM, et al.
Arabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factor.
Proc. Natl. Acad. Sci. U.S.A., 2012. 109(8): p. 3167-72
[PMID:22315425] - Mulekar JJ,Huq E
Does CK2 affect flowering time by modulating the autonomous pathway in Arabidopsis?
Plant Signal Behav, 2012. 7(2): p. 292-4
[PMID:22353866] - Pokhilko A, et al.
The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops.
Mol. Syst. Biol., 2012. 8: p. 574
[PMID:22395476] - Seo PJ, et al.
A self-regulatory circuit of CIRCADIAN CLOCK-ASSOCIATED1 underlies the circadian clock regulation of temperature responses in Arabidopsis.
Plant Cell, 2012. 24(6): p. 2427-42
[PMID:22715042] - Song HR,Noh YS
Rhythmic oscillation of histone acetylation and methylation at the Arabidopsis central clock loci.
Mol. Cells, 2012. 34(3): p. 279-87
[PMID:22878891] - Park MJ,Seo PJ,Park CM
CCA1 alternative splicing as a way of linking the circadian clock to temperature response in Arabidopsis.
Plant Signal Behav, 2012. 7(9): p. 1194-6
[PMID:22899064] - Lai AG, et al.
CIRCADIAN CLOCK-ASSOCIATED 1 regulates ROS homeostasis and oxidative stress responses.
Proc. Natl. Acad. Sci. U.S.A., 2012. 109(42): p. 17129-34
[PMID:23027948] - Kim MY,Shin JH,Kang YJ,Shim SR,Lee SH
Divergence of flowering genes in soybean.
J. Biosci., 2012. 37(5): p. 857-70
[PMID:23107921] - Hemmes H,Henriques R,Jang IC,Kim S,Chua NH
Circadian clock regulates dynamic chromatin modifications associated with Arabidopsis CCA1/LHY and TOC1 transcriptional rhythms.
Plant Cell Physiol., 2012. 53(12): p. 2016-29
[PMID:23128602] - Renault H, et al.
γ-Aminobutyric acid transaminase deficiency impairs central carbon metabolism and leads to cell wall defects during salt stress in Arabidopsis roots.
Plant Cell Environ., 2013. 36(5): p. 1009-18
[PMID:23148892] - Ueoka-Nakanishi H, et al.
Molecular mechanisms of circadian rhythm in Lotus japonicus and Arabidopsis thaliana are sufficiently compatible to regulate heterologous core clock genes robustly.
Biosci. Biotechnol. Biochem., 2012. 76(12): p. 2332-4
[PMID:23221703] - Kangisser S,Yakir E,Green RM
Proteasomal regulation of CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) stability is part of the complex control of CCA1.
Plant Signal Behav, 2013. 8(3): p. e23206
[PMID:23299326] - Pokhilko A,Mas P,Millar AJ
Modelling the widespread effects of TOC1 signalling on the plant circadian clock and its outputs.
BMC Syst Biol, 2013. 7: p. 23
[PMID:23506153] - Schmal C,Reimann P,Staiger D
A circadian clock-regulated toggle switch explains AtGRP7 and AtGRP8 oscillations in Arabidopsis thaliana.
PLoS Comput. Biol., 2013. 9(3): p. e1002986
[PMID:23555221] - Karlgren A,Gyllenstrand N,K
Conserved function of core clock proteins in the gymnosperm Norway spruce (Picea abies L. Karst).
PLoS ONE, 2013. 8(3): p. e60110
[PMID:23555899] - Cui X, et al.
Ubiquitin-specific proteases UBP12 and UBP13 act in circadian clock and photoperiodic flowering regulation in Arabidopsis.
Plant Physiol., 2013. 162(2): p. 897-906
[PMID:23645632] - Zhang C, et al.
Crosstalk between the circadian clock and innate immunity in Arabidopsis.
PLoS Pathog., 2013. 9(6): p. e1003370
[PMID:23754942] - Kusakina J,Gould PD,Hall A
A fast circadian clock at high temperatures is a conserved feature across Arabidopsis accessions and likely to be important for vegetative yield.
Plant Cell Environ., 2014. 37(2): p. 327-40
[PMID:23777196] - Karayekov E,Sellaro R,Legris M,Yanovsky MJ,Casal JJ
Heat shock-induced fluctuations in clock and light signaling enhance phytochrome B-mediated Arabidopsis deetiolation.
Plant Cell, 2013. 25(8): p. 2892-906
[PMID:23933882] - Muranaka T,Kubota S,Oyama T
A single-cell bioluminescence imaging system for monitoring cellular gene expression in a plant body.
Plant Cell Physiol., 2013. 54(12): p. 2085-93
[PMID:24058151] - Higham CF,Husmeier D
A Bayesian approach for parameter estimation in the extended clock gene circuit of Arabidopsis thaliana.
BMC Bioinformatics, 2013. 14 Suppl 10: p. S3
[PMID:24267177] - Qian H, et al.
The circadian clock gene regulatory module enantioselectively mediates imazethapyr-induced early flowering in Arabidopsis thaliana.
J. Plant Physiol., 2014. 171(5): p. 92-8
[PMID:24484962] - McClung CR
Wheels within wheels: new transcriptional feedback loops in the Arabidopsis circadian clock.
F1000Prime Rep, 2014. 6: p. 2
[PMID:24592314] - Knowles SM,Lu SX,Tobin EM
Pulsed induction of circadian clock genes in Arabidopsis seedlings.
Methods Mol. Biol., 2014. 1158: p. 203-8
[PMID:24792053] - Ng DW, et al.
A Role for CHH Methylation in the Parent-of-Origin Effect on Altered Circadian Rhythms and Biomass Heterosis in Arabidopsis Intraspecific Hybrids.
Plant Cell, 2014. 26(6): p. 2430-2440
[PMID:24894042] - Muranaka T,Okada M,Yomo J,Kubota S,Oyama T
Characterisation of circadian rhythms of various duckweeds.
Plant Biol (Stuttg), 2015. 17 Suppl 1: p. 66-74
[PMID:24942699] - Xie Q, et al.
LNK1 and LNK2 are transcriptional coactivators in the Arabidopsis circadian oscillator.
Plant Cell, 2014. 26(7): p. 2843-57
[PMID:25012192] - Pruneda-Paz JL, et al.
A genome-scale resource for the functional characterization of Arabidopsis transcription factors.
Cell Rep, 2014. 8(2): p. 622-32
[PMID:25043187] - Hsiao AS, et al.
Gene expression in plant lipid metabolism in Arabidopsis seedlings.
PLoS ONE, 2014. 9(9): p. e107372
[PMID:25264899] - Lee HG,Lee K,Jang K,Seo PJ
Circadian expression profiles of chromatin remodeling factor genes in Arabidopsis.
J. Plant Res., 2015. 128(1): p. 187-99
[PMID:25315904] - Filichkin SA, et al.
Environmental Stresses Modulate Abundance and Timing of Alternatively Spliced Circadian Transcripts in Arabidopsis.
Mol Plant, 2015.
[PMID:25366180] - Wang G,Zhang C,Battle S,Lu H
The phosphate transporter PHT4;1 is a salicylic acid regulator likely controlled by the circadian clock protein CCA1.
Front Plant Sci, 2014. 5: p. 701
[PMID:25566276] - Jin J, et al.
An Arabidopsis Transcriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors.
Mol. Biol. Evol., 2015. 32(7): p. 1767-73
[PMID:25750178] - Thommen Q, et al.
Probing entrainment of Ostreococcus tauri circadian clock by green and blue light through a mathematical modeling approach.
Front Genet, 2015. 6: p. 65
[PMID:25774167] - Xing H, et al.
LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors.
Plant Signal Behav, 2015. 10(3): p. e1010888
[PMID:25848708] - Zheng XY, et al.
Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid.
Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73
[PMID:26139525] - Litthauer S,Battle MW,Lawson T,Jones MA
Phototropins maintain robust circadian oscillation of PSII operating efficiency under blue light.
Plant J., 2015. 83(6): p. 1034-45
[PMID:26215041] - Nagel DH, et al.
Genome-wide identification of CCA1 targets uncovers an expanded clock network in Arabidopsis.
Proc. Natl. Acad. Sci. U.S.A., 2015. 112(34): p. E4802-10
[PMID:26261339] - Missra A, et al.
The Circadian Clock Modulates Global Daily Cycles of mRNA Ribosome Loading.
Plant Cell, 2015. 27(9): p. 2582-99
[PMID:26392078] - Flis A, et al.
Defining the robust behaviour of the plant clock gene circuit with absolute RNA timeseries and open infrastructure.
Open Biol, 2016.
[PMID:26468131] - Delis C, et al.
AtHESPERIN: a novel regulator of circadian rhythms with poly(A)-degrading activity in plants.
RNA Biol, 2016. 13(1): p. 68-82
[PMID:26619288] - Lee HG,Mas P,Seo PJ
MYB96 shapes the circadian gating of ABA signaling in Arabidopsis.
Sci Rep, 2016. 6: p. 17754
[PMID:26725725] - Shi H,Wei Y,He C
Melatonin-induced CBF/DREB1s are essential for diurnal change of disease resistance and CCA1 expression in Arabidopsis.
Plant Physiol. Biochem., 2016. 100: p. 150-155
[PMID:26828406] - Shimizu H,Torii K,Araki T,Endo M
Importance of epidermal clocks for regulation of hypocotyl elongation through PIF4 and IAA29.
Plant Signal Behav, 2016. 11(2): p. e1143999
[PMID:26829165] - Kamioka M, et al.
Direct Repression of Evening Genes by CIRCADIAN CLOCK-ASSOCIATED1 in the Arabidopsis Circadian Clock.
Plant Cell, 2016. 28(3): p. 696-711
[PMID:26941090] - Park MJ,Kwon YJ,Gil KE,Park CM
LATE ELONGATED HYPOCOTYL regulates photoperiodic flowering via the circadian clock in Arabidopsis.
BMC Plant Biol., 2016. 16(1): p. 114
[PMID:27207270] - Yuan S, et al.
Arabidopsis cryptochrome 1 functions in nitrogen regulation of flowering.
Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7661-6
[PMID:27325772] - Nitschke S, et al.
Circadian Stress Regimes Affect the Circadian Clock and Cause Jasmonic Acid-Dependent Cell Death in Cytokinin-Deficient Arabidopsis Plants.
Plant Cell, 2016. 28(7): p. 1616-39
[PMID:27354555] - Higashi T,Aoki K,Nagano AJ,Honjo MN,Fukuda H
Circadian Oscillation of the Lettuce Transcriptome under Constant Light and Light-Dark Conditions.
Front Plant Sci, 2016. 7: p. 1114
[PMID:27512400] - Marshall CM,Tartaglio V,Duarte M,Harmon FG
The Arabidopsis sickle Mutant Exhibits Altered Circadian Clock Responses to Cool Temperatures and Temperature-Dependent Alternative Splicing.
Plant Cell, 2016. 28(10): p. 2560-2575
[PMID:27624757] - Wu JF, et al.
LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
Nat Commun, 2016. 7: p. 13181
[PMID:27734958] - Li X, et al.
Blue Light- and Low Temperature-Regulated COR27 and COR28 Play Roles in the Arabidopsis Circadian Clock.
Plant Cell, 2016. 28(11): p. 2755-2769
[PMID:27837007] - Wang P, et al.
COR27 and COR28 encode nighttime repressors integrating Arabidopsis circadian clock and cold response.
J Integr Plant Biol, 2017. 59(2): p. 78-85
[PMID:27990760] - Ng DW,Chen HH,Chen ZJ
Heterologous protein-DNA interactions lead to biased allelic expression of circadian clock genes in interspecific hybrids.
Sci Rep, 2017. 7: p. 45087
[PMID:28345627] - Staley C, et al.
Diurnal cycling of rhizosphere bacterial communities is associated with shifts in carbon metabolism.
Microbiome, 2017. 5(1): p. 65
[PMID:28646918] - Zha P,Jing Y,Xu G,Lin R
PICKLE chromatin-remodeling factor controls thermosensory hypocotyl growth of Arabidopsis.
Plant Cell Environ., 2017. 40(10): p. 2426-2436
[PMID:28771755] - Su Y, et al.
Phosphorylation of Histone H2A at Serine 95: A Plant-Specific Mark Involved in Flowering Time Regulation and H2A.Z Deposition.
Plant Cell, 2017. 29(9): p. 2197-2213
[PMID:28790150] - Hassidim M, et al.
CIRCADIAN CLOCK ASSOCIATED1 (CCA1) and the Circadian Control of Stomatal Aperture.
Plant Physiol., 2017. 175(4): p. 1864-1877
[PMID:29084902] - Hansen LL,Imrie L,Le Bihan T,van den Burg HA,van Ooijen G
Sumoylation of the Plant Clock Transcription Factor CCA1 Suppresses DNA Binding.
J. Biol. Rhythms, 2017. 32(6): p. 570-582
[PMID:29172852] - Zheng H, et al.
MLK1 and MLK2 Coordinate RGA and CCA1 Activity to Regulate Hypocotyl Elongation in Arabidopsis thaliana.
Plant Cell, 2018. 30(1): p. 67-82
[PMID:29255112] - Li Z,Bonaldi K,Uribe F,Pruneda-Paz JL
A Localized Pseudomonas syringae Infection Triggers Systemic Clock Responses in Arabidopsis.
Curr. Biol., 2018. 28(4): p. 630-639.e4
[PMID:29398214] - Zhao X, et al.
COP1 SUPPRESSOR 4 promotes seedling photomorphogenesis by repressing CCA1 and PIF4 expression in Arabidopsis.
Proc. Natl. Acad. Sci. U.S.A., 2018. 115(45): p. 11631-11636
[PMID:30352855] - Wang ZY, et al.
A Myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene.
Plant Cell, 1997. 9(4): p. 491-507
[PMID:9144958] - Wang ZY,Tobin EM
Constitutive expression of the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) gene disrupts circadian rhythms and suppresses its own expression.
Cell, 1998. 93(7): p. 1207-17
[PMID:9657153] - Sugano S,Andronis C,Green RM,Wang ZY,Tobin EM
Protein kinase CK2 interacts with and phosphorylates the Arabidopsis circadian clock-associated 1 protein.
Proc. Natl. Acad. Sci. U.S.A., 1998. 95(18): p. 11020-5
[PMID:9724822]
|
