PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH10922.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

AP2

Protein Properties

Length: 1297aa MW: 133632 Da PI: 7.336

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH10922.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	41.5	3.3e-13	1008	1059	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ ++++grW+A+I++ + + ++++lg + + Aa+a++ a++k +g PNH10922.1 1008 SQYRGVTKHRRSGRWEAHIWV----KeIGRQVYLGGYEEEAHAAEAYDVAALKCKG 1059 78*****************....4345******99********99877 PP
2	AP2	31	6.5e-10	1103	1152	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+ ++ +grW+++I p g +k+++lg f + Aa+a+++ +l+g PNH10922.1 1103 STYRGVTAHP-SGRWESRIGIP---G-SKHIYLGLFEEERSAAAAYDRSLVRLRG 1152 56******.7*****8...3.6******99******9999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 1297 aa Download sequence
MLDTCCSMSN NRQLTPQLES AFYDELNATS GIGGMLLADG LFGPASDGPG GTDGALRSYG 60 SAPTGTQQLQ HHQPSSQAPF GYYGPPASAP SMPPAFMPTP SGPGGYFNGS EQHHTPPYGG 120 YMPYHATHGY GQPPPPSFAQ QMHPYHAHQQ QQPQQFYHQQ QHQHHHLQHP PPQPQQHYHH 180 APPSTAYPYA PDARVHSQAQ GNCGPGMPPP PAPQPPLQPA GAAHAHSGHF GPAPAASCAH 240 CSAYPGAEAV ERRESAGSTM TGEGRCGGEA AEAAVVRRRS SHGSSEGRPC DAGGNSGEPA 300 GQVAAAAAAA ERACAAVAAF QGTVIGRVGS YGGMDPAQAA PNPFRSASAA SAAAAAAATA 360 AGKHESYERL PAAAPLPYMY GGPSAGPPAP PSQQQQQQQP PQQQQQQQQP LQQQQPYSTD 420 KPSPMLSGRP SAPPSYDRGG QAASPWYGNP PSQLQGQQSD PTPHNSGAVT DRHQQQQQQQ 480 MHSGPSQQMQ HDMQQQLLQW QQQQQQQQQE QQQQQQQQGP LHHAPTTVYA SCLSYEQRPP 540 SQQQQQQQQQ QQKQQQQQAG QPRLPPQRRQ STPFAQQPQR HPQEEQQQQQ QQRRQQLLGF 600 GASEPSAAAL LHRVASAPAV NPGPRGPAAG PPPRPTPATT GGTSTPQSSS TAAGTSATTG 660 TGAYGGGGGG GAEPAWADHA WSAPPLRQQH HSYSQQNLQH THAHAQQLMP RPASEPALLM 720 QAAAAAATVA PPLQPEGRQR QTSAVSDCSV VLRDLLTYGG SSDGGMADML YGSGGGGGML 780 YGGGGGGVNP EMRGAMLSLM NDDEDDGDAS LAYVTGGAAA AAALGFGALG GADGGSFDGG 840 SFCGGGFGSG LVGAAPSLPA RPVRRRPSRG QGGGGAADAY FVDPAAAGAA AAGKPRLRPR 900 RSGGGSLTDA FAIAAAAAAA AAAVGISAAP PPPPPVGGGR ARAPKRSAAM AALSQITAQS 960 RSSSGGGGDD DRGGDADYSV GAAAAAAVAA EGEGEAGEED DGKARRSSQY RGVTKHRRSG 1020 RWEAHIWVKE IGRQVYLGGY EEEAHAAEAY DVAALKCKGP KAVRTNFPLP RYSGLLTALE 1080 CISLEELIMA VRRQSQGFSR GSSTYRGVTA HPSGRWESRI GIPGSKHIYL GLFEEERSAA 1140 AAYDRSLVRL RGSAAATNFS LAEYRRELAE YHAVQQGSLL RDTRMMPLTR AGPDFEKWIK 1200 SGFRAFPHLA AEAAATSPDL DMQDADGSAA AAAAMSTVAA AAASVTAAAA FMPQPLAAAG 1260 HGAAAAAAAA CSASPIEAVL AMAAAAAAAA AAGVTAV

Sequence ? help Back to Top

Protein Sequence Length: 1297 aa Download sequence

MLDTCCSMSN NRQLTPQLES AFYDELNATS GIGGMLLADG LFGPASDGPG GTDGALRSYG  60
SAPTGTQQLQ HHQPSSQAPF GYYGPPASAP SMPPAFMPTP SGPGGYFNGS EQHHTPPYGG  120
YMPYHATHGY GQPPPPSFAQ QMHPYHAHQQ QQPQQFYHQQ QHQHHHLQHP PPQPQQHYHH  180
APPSTAYPYA PDARVHSQAQ GNCGPGMPPP PAPQPPLQPA GAAHAHSGHF GPAPAASCAH  240
CSAYPGAEAV ERRESAGSTM TGEGRCGGEA AEAAVVRRRS SHGSSEGRPC DAGGNSGEPA  300
GQVAAAAAAA ERACAAVAAF QGTVIGRVGS YGGMDPAQAA PNPFRSASAA SAAAAAAATA  360
AGKHESYERL PAAAPLPYMY GGPSAGPPAP PSQQQQQQQP PQQQQQQQQP LQQQQPYSTD  420
KPSPMLSGRP SAPPSYDRGG QAASPWYGNP PSQLQGQQSD PTPHNSGAVT DRHQQQQQQQ  480
MHSGPSQQMQ HDMQQQLLQW QQQQQQQQQE QQQQQQQQGP LHHAPTTVYA SCLSYEQRPP  540
SQQQQQQQQQ QQKQQQQQAG QPRLPPQRRQ STPFAQQPQR HPQEEQQQQQ QQRRQQLLGF  600
GASEPSAAAL LHRVASAPAV NPGPRGPAAG PPPRPTPATT GGTSTPQSSS TAAGTSATTG  660
TGAYGGGGGG GAEPAWADHA WSAPPLRQQH HSYSQQNLQH THAHAQQLMP RPASEPALLM  720
QAAAAAATVA PPLQPEGRQR QTSAVSDCSV VLRDLLTYGG SSDGGMADML YGSGGGGGML  780
YGGGGGGVNP EMRGAMLSLM NDDEDDGDAS LAYVTGGAAA AAALGFGALG GADGGSFDGG  840
SFCGGGFGSG LVGAAPSLPA RPVRRRPSRG QGGGGAADAY FVDPAAAGAA AAGKPRLRPR  900
RSGGGSLTDA FAIAAAAAAA AAAVGISAAP PPPPPVGGGR ARAPKRSAAM AALSQITAQS  960
RSSSGGGGDD DRGGDADYSV GAAAAAAVAA EGEGEAGEED DGKARRSSQY RGVTKHRRSG  1020
RWEAHIWVKE IGRQVYLGGY EEEAHAAEAY DVAALKCKGP KAVRTNFPLP RYSGLLTALE  1080
CISLEELIMA VRRQSQGFSR GSSTYRGVTA HPSGRWESRI GIPGSKHIYL GLFEEERSAA  1140
AAYDRSLVRL RGSAAATNFS LAEYRRELAE YHAVQQGSLL RDTRMMPLTR AGPDFEKWIK  1200
SGFRAFPHLA AEAAATSPDL DMQDADGSAA AAAAMSTVAA AAASVTAAAA FMPQPLAAAG  1260
HGAAAAAAAA CSASPIEAVL AMAAAAAAAA AAGVTAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	2e-32	AP2 family protein