PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH08230.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

C2H2

Protein Properties

Length: 785aa MW: 81934.9 Da PI: 4.7587

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH08230.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.6e-05	336	360	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 ++C C+k+F++ +Lk+H r+ H PNH08230.1 336 FECVVCDKVFRSEKQLKNHERSkkH 360 89*****************998666 PP

Sequence ? help Back to Top
Protein Sequence Length: 785 aa Download sequence
MAAKPAKPKQ RCLYEVLEVA LDAEDDAIKK AYRKQALQWH PDKNSHRAEE AAERFKEIQN 60 AYEILSDKHE RAWYDDHRDQ ILRSGERHQA GGGGGGFEGA TGKPPEDEEL FAFFSSSCYS 120 GYGDGPKGFY GVYEGVFSKL AKQEQEAWER HDAGAAPEPA ATRMEDVGAA GLAGSDSEGE 180 GGGGSAPSLP SFGSSESDAA AVNAFYSQWG NFATLRSFAW ADLYNPAAAP NRYVRRKMED 240 ENRKARRAAR REYIDTVREL LEFVRKRDKR VAKAQAEEAA RRAARAAEDE LRRKREREER 300 MARAAQYEDA AWIRSSEPHH GDEGDSEEEE VEEELFECVV CDKVFRSEKQ LKNHERSKKH 360 VEMVAELRAM LEEEEAAALN LGPEVPEAAG GAAGASGSGR GAGGAGAKDG PAEGGRGGGS 420 KKKKKAKRRQ AQAGAQALHA QDAAGDEGEE EEVEEEADAP AAGGSAQRLP PQQQKHKQKG 480 GKPAGPKRPP SPPPRQAASD DGDGEEADEG EEEDGGVEDE EDEDAMLARM MAAHARVKDG 540 GGKKGKGAAA VDEEEGAGSE ADAGARGGAA GEKSGGDEGG EDEEEEEEEE EEVEEEVEED 600 EEAALARMLS SKQAAGGSGR AAAPGPRAKR EAAKGESEQE KGGAGGGEEV ASAPSASGAE 660 SKPEQRREGG KPAAKGGGGG GGAKAAAAAA AGQGGGKKAA AAAAAAAAAA AAAAAAAAAG 720 GEDSDSDGGP GKKKDKRKAK LAARKAAATA PGPGQLFCVV CSTTFGSRNQ LFKHISDTGH 780 AVPRG

Sequence ? help Back to Top

Protein Sequence Length: 785 aa Download sequence

MAAKPAKPKQ RCLYEVLEVA LDAEDDAIKK AYRKQALQWH PDKNSHRAEE AAERFKEIQN  60
AYEILSDKHE RAWYDDHRDQ ILRSGERHQA GGGGGGFEGA TGKPPEDEEL FAFFSSSCYS  120
GYGDGPKGFY GVYEGVFSKL AKQEQEAWER HDAGAAPEPA ATRMEDVGAA GLAGSDSEGE  180
GGGGSAPSLP SFGSSESDAA AVNAFYSQWG NFATLRSFAW ADLYNPAAAP NRYVRRKMED  240
ENRKARRAAR REYIDTVREL LEFVRKRDKR VAKAQAEEAA RRAARAAEDE LRRKREREER  300
MARAAQYEDA AWIRSSEPHH GDEGDSEEEE VEEELFECVV CDKVFRSEKQ LKNHERSKKH  360
VEMVAELRAM LEEEEAAALN LGPEVPEAAG GAAGASGSGR GAGGAGAKDG PAEGGRGGGS  420
KKKKKAKRRQ AQAGAQALHA QDAAGDEGEE EEVEEEADAP AAGGSAQRLP PQQQKHKQKG  480
GKPAGPKRPP SPPPRQAASD DGDGEEADEG EEEDGGVEDE EDEDAMLARM MAAHARVKDG  540
GGKKGKGAAA VDEEEGAGSE ADAGARGGAA GEKSGGDEGG EDEEEEEEEE EEVEEEVEED  600
EEAALARMLS SKQAAGGSGR AAAPGPRAKR EAAKGESEQE KGGAGGGEEV ASAPSASGAE  660
SKPEQRREGG KPAAKGGGGG GGAKAAAAAA AGQGGGKKAA AAAAAAAAAA AAAAAAAAAG  720
GEDSDSDGGP GKKKDKRKAK LAARKAAATA PGPGQLFCVV CSTTFGSRNQ LFKHISDTGH  780
AVPRG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	422	430	KKKKAKRRQ
2	423	431	KKKKAKRRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74250.1	3e-45	C2H2 family protein