PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH07179.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

ERF

Protein Properties

Length: 745aa MW: 74321.2 Da PI: 10.1948

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH07179.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	27.2	9.9e-09	670	712	3	45
AP2 3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAaka 45 y+GVr+++ +g+W+AeIrdp+ + + + +++ e+A+++ PNH07179.1 670 YRGVRQRP-WGKWAAEIRDPTVGArRIHDIESKYYADGEDAYEM 712 9*****.********9774433366666666666666665 PP

Sequence ? help Back to Top
Protein Sequence Length: 745 aa Download sequence
MGDSVPRDAG PAPAGPAPAA SPQAPSVTFA AQPLPQAPNA HQTSPSPGPA QAPPPGSLSG 60 QPIAGQQPGA AHSAAYQPGA PMGAPGPRPG MPATAPLSSA SAAALQQSTA AAMFNTLMRF 120 PPAPAGGPGG PTPLQLAQQA ALRPMFPPGL VGQSLPPHVL QAMQELQAAQ AQLQATAHAN 180 AAAQANHAQA QAQLQAAEAA KAANNAQQQA GAGGLPPPHP GAAAPAEAIA PPPGPAPPHS 240 AARAGATSPP PPHAAMPHSP AAAMQALASA QAALQAAQAQ MAAAAAAAAA AAAGQAASGQ 300 AGTPAHPPTQ AQIQAQLQAQ ASFQAHMAMA QQLRNAAAAG TAAGAGQPGG LPRPPFPGGQ 360 PPPGPVAAAA AQPRPTQGQQ PGIAGAVRPP APQPGATPPG AAPQMAGQAA AGQPAGPRPA 420 GLPQGAPPQP GAAHPPPPGA AGAQAARAAG AAAGGPGPGQ QAAGGGGGGA AAAANGPPAA 480 PSGAAQQMQQ QLAAQQQAAQ QQQQQAAQQQ QAAQQQARQA AQQQAQQAAQ QQAAAQQAQQ 540 QAQQQAQQQA QELEQAQQLQ QAQDEEAQLQ LQMQQQMQMQ LQIQQQIQMQ QQMQQMQMQQ 600 QMQQQQAHHQ ASHHHHHQPE EDESSEDSDG DMVSPRKRRE KKKGHRGQRG HDAHGGGGDD 660 VVSKGKNKTY RGVRQRPWGK WAAEIRDPTV GARRIHDIES KYYADGEDAY EMRKYFGPTP 720 PALAKKAAAL TAAATGSGPT PAASS

Sequence ? help Back to Top

Protein Sequence Length: 745 aa Download sequence

MGDSVPRDAG PAPAGPAPAA SPQAPSVTFA AQPLPQAPNA HQTSPSPGPA QAPPPGSLSG  60
QPIAGQQPGA AHSAAYQPGA PMGAPGPRPG MPATAPLSSA SAAALQQSTA AAMFNTLMRF  120
PPAPAGGPGG PTPLQLAQQA ALRPMFPPGL VGQSLPPHVL QAMQELQAAQ AQLQATAHAN  180
AAAQANHAQA QAQLQAAEAA KAANNAQQQA GAGGLPPPHP GAAAPAEAIA PPPGPAPPHS  240
AARAGATSPP PPHAAMPHSP AAAMQALASA QAALQAAQAQ MAAAAAAAAA AAAGQAASGQ  300
AGTPAHPPTQ AQIQAQLQAQ ASFQAHMAMA QQLRNAAAAG TAAGAGQPGG LPRPPFPGGQ  360
PPPGPVAAAA AQPRPTQGQQ PGIAGAVRPP APQPGATPPG AAPQMAGQAA AGQPAGPRPA  420
GLPQGAPPQP GAAHPPPPGA AGAQAARAAG AAAGGPGPGQ QAAGGGGGGA AAAANGPPAA  480
PSGAAQQMQQ QLAAQQQAAQ QQQQQAAQQQ QAAQQQARQA AQQQAQQAAQ QQAAAQQAQQ  540
QAQQQAQQQA QELEQAQQLQ QAQDEEAQLQ LQMQQQMQMQ LQIQQQIQMQ QQMQQMQMQQ  600
QMQQQQAHHQ ASHHHHHQPE EDESSEDSDG DMVSPRKRRE KKKGHRGQRG HDAHGGGGDD  660
VVSKGKNKTY RGVRQRPWGK WAAEIRDPTV GARRIHDIES KYYADGEDAY EMRKYFGPTP  720
PALAKKAAAL TAAATGSGPT PAASS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	636	641	RKRREK
2	636	666	RKRREKKKGHRGQRGHDAHGGGGDDVVSKGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47520.1	5e-09	ERF family protein